Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0042 ATGAGAAGATCAGGTGTAAATCAACCAAAAGTCAAGCGTCTTGTTGGAAAATATGAAATCGGTCGAACAATTGGCGAGGGTACATTTGCAAAAGTGAAATTTGCCAAAAATTCCGAGACTGGGGAACATGTAGCAATAAAGATCCTTGACAAAGAGAAAGTTCTCAAGCACAAGATGGCTGAACAGATCAAGCGGGAAATAGCAACAATGAAACTAATAAAGCATCCACATGTCGTCCAATTGTATGAGGTGATGGGGAGCAAAACAAAGATATTTATTGTTTTGGAGTTTGTTACCGGAGGAGAGCTGTTTGATAAAATTGTAAATCATGGGCGGATGAGTGAAAATGAGGCACGGAGATATTTCCAGCAACTTATAAATGCTGTTGATTATTGTCATAGCAGGGGTGTTTACCACCGGGATCTTAAGCCAGAAAATCTATTGTTAGATGCCTACGGGAATCTTAAAGTTTCTGATTTTGGATTGAGTGCACTGTCACAACAAGTTAAGGATGACGGCCTGCTTCACACTACTTGTGGAACTCCAAACTATGTTGCTCCTGAGGTCCTTGATGATAGAGGCTACGATGGTGCAACTGCAGATTTATGGTCTTGTGGAGTCATACTCTTCGTATTGCTTGCAGGTTACTTGCCTTTTGATGATTCTAATCTTATGAACCTGTACAAAAAAGTGAGCATTTTTTTACCTTCTCCATTTTTCTTTTTCAAATTTAAATCCTATTGTGCAATCCTAATTTTCTCTGCATTCTTCAACGTTCACTTCTATTATGTGCAGATCTCGGCTGCTGAATTTTCCTGTCCTCCATGGCTTTCATTAGATGCCATGAAATTGATAACTCGAATTTTGGATCCCAATCCAATGACTCGCATCACTGTACCTGAAATTTTGGAAGATGAATGGTTTAAGAAAGACTATAAGCCCCCTGTTTTCGAGGAGAATAAGATTGCAAACTTGGATGATGTAGAAGCTGTCTTTAAAGACTCAGAAGAGCATCATGTGACAGAGAAGAAGGAAGAACAGCCAGTAGCCATGAATGCCTTTGAGTTGATTTCAATGTCAAAAGGGCTCAATCTGGCAAATTTGTTTGGTACAGAACAGGAATTCAAGAGAGAAACAAGGTTCACATCAAAGTGCTCAGCTAATGAAATTGTACATAAGATTGAAGAAGCTGCCAAACCCCTTGGTTTTGATGTACAAAAGAAAAATTACAAGATGAGGCTTGAAAATGTGAAAGCCGGTCGGAAGGGAAACCTTAATGTTGCCACAGAGATTTTGCAAGTGGCACCTTCTGTTCATGTGGTTGAGATGCGAAAAGCAAAGGGTGACACTTTGGAGTTTCACAAGTTCTACAAAAACCTCTCCACCTCCCTGGAGGATGTTGTTTGGAAGACTGAGGAAGACATGCAAGAAACAAAGTGA 1440 39.86 MRRSGVNQPKVKRLVGKYEIGRTIGEGTFAKVKFAKNSETGEHVAIKILDKEKVLKHKMAEQIKREIATMKLIKHPHVVQLYEVMGSKTKIFIVLEFVTGGELFDKIVNHGRMSENEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLDDRGYDGATADLWSCGVILFVLLAGYLPFDDSNLMNLYKKVSIFLPSPFFFFKFKSYCAILIFSAFFNVHFYYVQISAAEFSCPPWLSLDAMKLITRILDPNPMTRITVPEILEDEWFKKDYKPPVFEENKIANLDDVEAVFKDSEEHHVTEKKEEQPVAMNAFELISMSKGLNLANLFGTEQEFKRETRFTSKCSANEIVHKIEEAAKPLGFDVQKKNYKMRLENVKAGRKGNLNVATEILQVAPSVHVVEMRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMQETK 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 330998 340812 - MC02g0035 Mch2g0042 680964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0042 479 Gene3D Kinase associated domain 1, KA1 345 470 - -
Mch2g0042 479 Pfam Protein kinase domain 18 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch2g0042 479 CDD STKc_SnRK3 17 307 - -
Mch2g0042 479 FunFam Non-specific serine/threonine protein kinase 11 238 - -
Mch2g0042 479 SMART serkin_6 18 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch2g0042 479 Gene3D Transferase(Phosphotransferase) domain 1 98 315 - -
Mch2g0042 479 SUPERFAMILY Protein kinase-like (PK-like) 14 334 IPR011009 -
Mch2g0042 479 ProSiteProfiles NAF domain profile. 346 370 IPR018451 GO:0007165(InterPro)
Mch2g0042 479 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Mch2g0042 479 FunFam Non-specific serine/threonine protein kinase 345 470 - -
Mch2g0042 479 Pfam NAF domain 348 407 IPR004041 GO:0007165(InterPro)
Mch2g0042 479 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 458 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Mch2g0042 479 ProSiteProfiles Protein kinase domain profile. 18 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch2g0042 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch2g0042 479 Gene3D Phosphorylase Kinase; domain 1 7 97 - -
Mch2g0042 479 CDD CIPK_C 352 466 - -
Mch2g0042 479 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0042 Mch-Chr2:330998 Mch3g0968 Mch-Chr3:13528969 4.52E-218 dispersed
Mch2g0042 Mch-Chr2:330998 Mch5g1507 Mch-Chr5:16139926 2.30E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77174 PF00069 Pkinase 5.90E-72 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0042 - - - 0.0