Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0077 ATGAGTATTGTAGAATTCAGAGAGAAGGAGATGTACCAGCAGAAGAAGTTAAGGGAAGAACATACTTCTTCTTCTGGGGCCAGCTTCTGCAAGGAAGTGACCGAGTTGCGCCTTACATCGATAGATTCTCAAGCAGCAACTTCTCGTCCAGAGTTCAAAAGCGTCTCTTCCAGGAAATCTTCCACTGGTTTTGGCAGGAATTGTAACAATGTACATGAGCTACTAGATTGCACTGTTTGCATGGATTTAATGCACCCTCCAATTTACCAGTGTGCAAATGGCCACACCCTTTGTTCAAGCTGCAAGTCAAGGGTTCACAACTGCTGCCCTACGTGCCGCCATGAGCTTGGAAACATAAGGTGCCTAGTGCTGGAAAAGGTGGCCGAGTCGCTCGAACTCCCTTGTGTGTACCAAAATCTAGGCTGCATTGACACGCTCCCATACTACAGCAAGCTTAAACATGAGAAGAACTGTAAATATCGCCCCTACAACTGCCCTTATGCAGGAGGTGAATGTTCTGTAACTGGTGACATCCCGTACCTCGTCATGCATCTCAAGGACGATCACGAGGTTGATATGCATGAGGGATGTTCCTTCAGCCATAGATACGTCAAATCCAATCCCCGAGAAGTTGAAAATGCTACATGGATGCTAACTGTATTTAACTGCTTTGGACGACAATTCTGTTTGCACTTTGAAGCATTTCGGTTAGGAACAGCACCTGTTTACATGGCGTTCCTCCGGTTCATGGGCGACGACGATGATGCGAAGAAATTTTCTTACAGTTTGGAAGTTGGTGGAAATGGGAGAAAACTCATGTGGCAAGGTACGCCGAGAAGCATCAGGGATAGCCATCGGAAGGTTCGGGACAGTCAGGATGGATTGATCATTCACAGGAACTTGGCTCTGTTCTGCTCTGGAAATCATGGCCAGGAACTGAAGCTCAAGGTTGTAGGACGAATATGGAGAGTACGGTGA 978 46.83 MSIVEFREKEMYQQKKLREEHTSSSGASFCKEVTELRLTSIDSQAATSRPEFKSVSSRKSSTGFGRNCNNVHELLDCTVCMDLMHPPIYQCANGHTLCSSCKSRVHNCCPTCRHELGNIRCLVLEKVAESLELPCVYQNLGCIDTLPYYSKLKHEKNCKYRPYNCPYAGGECSVTGDIPYLVMHLKDDHEVDMHEGCSFSHRYVKSNPREVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKKFSYSLEVGGNGRKLMWQGTPRSIRDSHRKVRDSQDGLIIHRNLALFCSGNHGQELKLKVVGRIWRVR 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 580124 589822 - MC02g0066 Mch2g0077 680999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0077 325 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 77 112 IPR049548 -
Mch2g0077 325 ProSiteProfiles Zinc finger SIAH-type profile. 130 190 IPR013010 GO:0008270(InterPro)
Mch2g0077 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 185 IPR013083 -
Mch2g0077 325 SUPERFAMILY TRAF domain-like 130 321 - -
Mch2g0077 325 SUPERFAMILY RING/U-box 64 117 - -
Mch2g0077 325 FunFam E3 ubiquitin-protein ligase SINAT5-like 186 318 - -
Mch2g0077 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 129 IPR013083 -
Mch2g0077 325 CDD RING-HC_SIAHs 75 113 - -
Mch2g0077 325 Pfam Sina, zinc finger 126 201 - -
Mch2g0077 325 FunFam E3 ubiquitin-protein ligase SINAT3 127 185 - -
Mch2g0077 325 Pfam Sina, TRAF-like domain 221 317 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Mch2g0077 325 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 186 318 IPR008974 GO:0005515(InterPro)
Mch2g0077 325 ProSiteProfiles Zinc finger RING-type profile. 77 113 IPR001841 -
Mch2g0077 325 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 48 320 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0077 Mch-Chr2:580124 Mch4g1590 Mch-Chr4:19156332 2.34E-155 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0077 K04506 - csv:101213438 603.979