Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0078 ATGGCTTCTCTTAACGCTATTACTGTTCCTTTGGTTTTGTGTTTGTGTTTGATGGTTGGGTGTGCCACTGCTCAGCTGAGCTCCACTTTCTACGACTCCACATGTCCCAATGTGTCCAGCATTGTGCATGGTGTTGTGCAGCAAGCTCTCCGAGGTGACGACAGAGCTGGGGCCAAACTCATCCGCCTCCACTTCCACGATTGCTTTGTCGACGGATGTGACGGGTCGGTTCTACTAGAGGATCAGGATGGCGTGGTGAGCGAGCTTGGTGCGCCAGGAAACGGAGGCATCACAGGATTCAACATCGTTAACGACATCAAAACTGCTGTGGAGAATGTTTGCCCAGGCGTCGTCTCCTGTGCCGACATTCTAGCCCTATCCTCTCGAGATGCTGTTACATTGGCAGGAGGAGAGGGTTGGACAGTTCAATTGGGAAGAAGAGACAGCAGAACAGCAAATGTGGATGGAGCCAGGAATAGGCTTCCAAGTCCTTTTGAGGATCTCTCTGTACTTCAAAGAAAGTTCAGTGATGTTGGCCTAGATGACACCACTGATCTCGTTGCTTTATCCGGTGCACACACGTTCGGGCGATCAAGATGCAGATTTTTTGACAATCGGTTGGACGGTTCAAGCCCGGACCCGCCCCTGGACTCGACGTACGCAGATCAGCTCCGGCAGAGTTGCCAACCCGGAAGAGACACGTTCGTGAATCTGGACCCCACCACTCCGGACACGTTCGACAGCAACTACTTCACAAATCTCCAAAACAACCGTGGCCTGCTGGGAAGCGACCAGGTTCTGTTCTCCACCGCCGGGGCTCCCACCGTCAGTATCGTCAACAGCTTCGCCGGCAGCCAGAGCCAGTTCTTCTCCGCCTTCGCTCAGTCCATGATTAGAATGGGAAATCTTGACCCTTTGACCGGAACCGCCGGCGAAATCAGGTCCAATTGCAGAAGGCTCAACTGA 966 53.31 MASLNAITVPLVLCLCLMVGCATAQLSSTFYDSTCPNVSSIVHGVVQQALRGDDRAGAKLIRLHFHDCFVDGCDGSVLLEDQDGVVSELGAPGNGGITGFNIVNDIKTAVENVCPGVVSCADILALSSRDAVTLAGGEGWTVQLGRRDSRTANVDGARNRLPSPFEDLSVLQRKFSDVGLDDTTDLVALSGAHTFGRSRCRFFDNRLDGSSPDPPLDSTYADQLRQSCQPGRDTFVNLDPTTPDTFDSNYFTNLQNNRGLLGSDQVLFSTAGAPTVSIVNSFAGSQSQFFSAFAQSMIRMGNLDPLTGTAGEIRSNCRRLN 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 596146 598453 - MC02g_new0012 Mch2g0078 681000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0078 321 Pfam Peroxidase 43 284 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch2g0078 321 SUPERFAMILY Heme-dependent peroxidases 25 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch2g0078 321 FunFam Peroxidase 162 300 - -
Mch2g0078 321 ProSiteProfiles Plant heme peroxidase family profile. 25 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch2g0078 321 Gene3D - 30 321 - -
Mch2g0078 321 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch2g0078 321 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch2g0078 321 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch2g0078 321 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch2g0078 321 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch2g0078 321 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch2g0078 321 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch2g0078 321 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch2g0078 321 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch2g0078 321 CDD secretory_peroxidase 25 319 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Mch2g0078 321 Gene3D Peroxidase, domain 2 162 300 - -
Mch2g0078 321 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Mch2g0078 321 PANTHER PEROXIDASE 72-RELATED 15 319 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch2g0078 321 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601(InterPro)
Mch2g0078 321 FunFam Peroxidase 29 177 - -
Mch2g0078 321 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch2g0078 321 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch2g0078 321 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch2g0078 321 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch2g0078 321 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0078 Mch-Chr2:596146 Mch6g2632 Mch-Chr6:28090963 1.71E-134 dispersed
Mch2g0078 Mch-Chr2:596146 Mch2g0079 Mch-Chr2:604129 7.48E-161 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0078 K00430 - csv:101212957 491.886