Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0127 ATGGGATCCATGAATTCAAACAATTGGCTCTCCTTCCCACTTTCACCAACTAGTTCTTCTCTTCCACAATCCCATTCCCACCACTTCTCTTTGGGTAATTTGGAGAATGATAGTATGGACATCCCATTTCAAACCCACGAGTGGAATCTGATAAATAGTGAAGGCGGTGGAGAAGTTCCAAAAGTGGCAGATTTCTTAGGCGTAAGTGTAAGCAAGGCAGAAAATGAGACGGATCTGATTGGGTATAATGAAGTTGAAGGCAATGATACGGACTACTTGTTTCCAATCACAAGATTGGTGCCGCTTCAACAAGCAGCCACGGCCACTACTATTCATGTCCCCGATTCTTCTACTTCTAACTATGATCACCTTCAAGATAATTCTAATAGTTTGCAGTCCTTGACCCTTTCCATGGGCACTGCCAAGCCCTCCGCTGCCACTGCCGACAACACCGCTAACACCGCCCTCGAGGTCACCCCGAGAAGAACTCTGGACACTTTTGGCCAAAGAACATCTATATATCGGGGCGTCACCAGGCATAGATGGACGGGGAGATATGAAGCTCATCTGTGGGATAATAGTTGTAGGAGGGAAGGGCAGTCCAGGAAGGGTCGCCAAGGTGGGTATGACAAAGAAGAGAAAGCAGCTAGGGCTTATGATCTTGCTGCATTGAAGTACTGGGGAACATCCACCACCACAAATTTTCCTATTAGTAACTATGAGAAGGAAGTGGAGGAAATGAAGCACATGACAAGACAAGAATTTGTGGCTGCCATTAGAAGGAAAAGTAGTGGGTTTTCAAGAGGCGCATCAATGTATCGTGGAGTTACAAGGCACCATCAGCATGGAAGATGGCAGGCAAGGATTGGAAGAGTTGCAGGAAACAAAGATCTTTATTTGGGAACTTTCAGTACGGAAGAGGAAGCAGCAGAAGCGTACGACATAGCAGCGATAAAATTCCGGGGTCTAAACGCAGTGACGAACTTCGACATGAGCCGTTACGACGTGAAGAGCATTTTGGAGAGCAACAGCCTTCCCATCGGCGGTGGGGCCGCCAAACGCCTCAAAGAAGCCCAGGCAATTGAGTCCTCCAGAAAACGCGACCAAATGATTGCCCTCGCCGCCGGAGCCGGAGCCGGAGCCGGAGCCTCCACCACCTTCCACTACGGCAGCTCGTCCAACGCCGCCGCATACCCATCTCTTTTGCAACAACCCAATTCCAATTGCATGGACCACCACCAACTCCACCTCCACACTCAGCCACTGCTCACTCTTCAAAACCACGACCACATTTCTCCCCTACCACTACCACATTATTCCCATGATCACCACACTAATGCTAATAGTTACATCCACACCCAGCTCCACTTGCAATCCGAACCCTCTAGCATGCAGATGCACCACCACCTCTACGGCGGCTATCACCCCGCTTTGCTCCACGGCATGATCAATCCAAATTTGGAGAATAATAATAATAATATTGGCAATGGGTATCATGTTGGAAATGCGTTTGGGATGGGTTCTTCTACCTCGGCGTCGGCGTCGGCGGAGGAGTATGCGTTGGTTAAGGTTGACTATGATATGCCTTCTGGTGGTGCTGCTGGATACGGGGCCGGCTGGTCCGGGGATTCGGTTCAGGCTTCTAACGCTAACGCTGGGGTTTTTTCAATGTGGAACGAA 1680 49.4 MGSMNSNNWLSFPLSPTSSSLPQSHSHHFSLGNLENDSMDIPFQTHEWNLINSEGGGEVPKVADFLGVSVSKAENETDLIGYNEVEGNDTDYLFPITRLVPLQQAATATTIHVPDSSTSNYDHLQDNSNSLQSLTLSMGTAKPSAATADNTANTALEVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNSLPIGGGAAKRLKEAQAIESSRKRDQMIALAAGAGAGAGASTTFHYGSSSNAAAYPSLLQQPNSNCMDHHQLHLHTQPLLTLQNHDHISPLPLPHYSHDHHTNANSYIHTQLHLQSEPSSMQMHHHLYGGYHPALLHGMINPNLENNNNNIGNGYHVGNAFGMGSSTSASASAEEYALVKVDYDMPSGGAAGYGAGWSGDSVQASNANAGVFSMWNE 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 962390 965443 - MC02g0088 Mch2g0127 681049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0127 560 PRINTS Ethylene responsive element binding protein signature 174 185 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0127 560 PRINTS Ethylene responsive element binding protein signature 312 332 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0127 560 SUPERFAMILY DNA-binding domain 172 238 IPR016177 GO:0003677(InterPro)
Mch2g0127 560 CDD AP2 271 332 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0127 560 Pfam AP2 domain 273 322 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0127 560 FunFam AP2-like ethylene-responsive transcription factor 271 332 - -
Mch2g0127 560 Gene3D AP2/ERF domain 272 332 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0127 560 Gene3D AP2/ERF domain 173 238 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0127 560 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 127 403 - -
Mch2g0127 560 ProSiteProfiles AP2/ERF domain profile. 173 236 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0127 560 FunFam AP2-like ethylene-responsive transcription factor ANT 172 238 - -
Mch2g0127 560 CDD AP2 172 238 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0127 560 ProSiteProfiles AP2/ERF domain profile. 272 330 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0127 560 SMART rav1_2 272 336 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0127 560 SMART rav1_2 173 242 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0127 560 SUPERFAMILY DNA-binding domain 271 332 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0127 Mch-Chr2:962390 Mch8g2499 Mch-Chr8:27903072 2.00E-123 dispersed
Mch2g0127 Mch-Chr2:962390 Mch8g1031 Mch-Chr8:7280075 2.55E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42839 PF00847 AP2 2.60E-09 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0127 K09285 - csv:101207097 725.702