Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch2g0127 | ATGGGATCCATGAATTCAAACAATTGGCTCTCCTTCCCACTTTCACCAACTAGTTCTTCTCTTCCACAATCCCATTCCCACCACTTCTCTTTGGGTAATTTGGAGAATGATAGTATGGACATCCCATTTCAAACCCACGAGTGGAATCTGATAAATAGTGAAGGCGGTGGAGAAGTTCCAAAAGTGGCAGATTTCTTAGGCGTAAGTGTAAGCAAGGCAGAAAATGAGACGGATCTGATTGGGTATAATGAAGTTGAAGGCAATGATACGGACTACTTGTTTCCAATCACAAGATTGGTGCCGCTTCAACAAGCAGCCACGGCCACTACTATTCATGTCCCCGATTCTTCTACTTCTAACTATGATCACCTTCAAGATAATTCTAATAGTTTGCAGTCCTTGACCCTTTCCATGGGCACTGCCAAGCCCTCCGCTGCCACTGCCGACAACACCGCTAACACCGCCCTCGAGGTCACCCCGAGAAGAACTCTGGACACTTTTGGCCAAAGAACATCTATATATCGGGGCGTCACCAGGCATAGATGGACGGGGAGATATGAAGCTCATCTGTGGGATAATAGTTGTAGGAGGGAAGGGCAGTCCAGGAAGGGTCGCCAAGGTGGGTATGACAAAGAAGAGAAAGCAGCTAGGGCTTATGATCTTGCTGCATTGAAGTACTGGGGAACATCCACCACCACAAATTTTCCTATTAGTAACTATGAGAAGGAAGTGGAGGAAATGAAGCACATGACAAGACAAGAATTTGTGGCTGCCATTAGAAGGAAAAGTAGTGGGTTTTCAAGAGGCGCATCAATGTATCGTGGAGTTACAAGGCACCATCAGCATGGAAGATGGCAGGCAAGGATTGGAAGAGTTGCAGGAAACAAAGATCTTTATTTGGGAACTTTCAGTACGGAAGAGGAAGCAGCAGAAGCGTACGACATAGCAGCGATAAAATTCCGGGGTCTAAACGCAGTGACGAACTTCGACATGAGCCGTTACGACGTGAAGAGCATTTTGGAGAGCAACAGCCTTCCCATCGGCGGTGGGGCCGCCAAACGCCTCAAAGAAGCCCAGGCAATTGAGTCCTCCAGAAAACGCGACCAAATGATTGCCCTCGCCGCCGGAGCCGGAGCCGGAGCCGGAGCCTCCACCACCTTCCACTACGGCAGCTCGTCCAACGCCGCCGCATACCCATCTCTTTTGCAACAACCCAATTCCAATTGCATGGACCACCACCAACTCCACCTCCACACTCAGCCACTGCTCACTCTTCAAAACCACGACCACATTTCTCCCCTACCACTACCACATTATTCCCATGATCACCACACTAATGCTAATAGTTACATCCACACCCAGCTCCACTTGCAATCCGAACCCTCTAGCATGCAGATGCACCACCACCTCTACGGCGGCTATCACCCCGCTTTGCTCCACGGCATGATCAATCCAAATTTGGAGAATAATAATAATAATATTGGCAATGGGTATCATGTTGGAAATGCGTTTGGGATGGGTTCTTCTACCTCGGCGTCGGCGTCGGCGGAGGAGTATGCGTTGGTTAAGGTTGACTATGATATGCCTTCTGGTGGTGCTGCTGGATACGGGGCCGGCTGGTCCGGGGATTCGGTTCAGGCTTCTAACGCTAACGCTGGGGTTTTTTCAATGTGGAACGAA | 1680 | 49.4 | MGSMNSNNWLSFPLSPTSSSLPQSHSHHFSLGNLENDSMDIPFQTHEWNLINSEGGGEVPKVADFLGVSVSKAENETDLIGYNEVEGNDTDYLFPITRLVPLQQAATATTIHVPDSSTSNYDHLQDNSNSLQSLTLSMGTAKPSAATADNTANTALEVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNSLPIGGGAAKRLKEAQAIESSRKRDQMIALAAGAGAGAGASTTFHYGSSSNAAAYPSLLQQPNSNCMDHHQLHLHTQPLLTLQNHDHISPLPLPHYSHDHHTNANSYIHTQLHLQSEPSSMQMHHHLYGGYHPALLHGMINPNLENNNNNIGNGYHVGNAFGMGSSTSASASAEEYALVKVDYDMPSGGAAGYGAGWSGDSVQASNANAGVFSMWNE | 560 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 962390 | 965443 | - | MC02g0088 | Mch2g0127 | 681049 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch2g0127 | 560 | PRINTS | Ethylene responsive element binding protein signature | 174 | 185 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0127 | 560 | PRINTS | Ethylene responsive element binding protein signature | 312 | 332 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0127 | 560 | SUPERFAMILY | DNA-binding domain | 172 | 238 | IPR016177 | GO:0003677(InterPro) | |
Mch2g0127 | 560 | CDD | AP2 | 271 | 332 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0127 | 560 | Pfam | AP2 domain | 273 | 322 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0127 | 560 | FunFam | AP2-like ethylene-responsive transcription factor | 271 | 332 | - | - | |
Mch2g0127 | 560 | Gene3D | AP2/ERF domain | 272 | 332 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0127 | 560 | Gene3D | AP2/ERF domain | 173 | 238 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0127 | 560 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 127 | 403 | - | - | |
Mch2g0127 | 560 | ProSiteProfiles | AP2/ERF domain profile. | 173 | 236 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0127 | 560 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 172 | 238 | - | - | |
Mch2g0127 | 560 | CDD | AP2 | 172 | 238 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0127 | 560 | ProSiteProfiles | AP2/ERF domain profile. | 272 | 330 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0127 | 560 | SMART | rav1_2 | 272 | 336 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0127 | 560 | SMART | rav1_2 | 173 | 242 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0127 | 560 | SUPERFAMILY | DNA-binding domain | 271 | 332 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0127 | Mch-Chr2:962390 | Mch8g2499 | Mch-Chr8:27903072 | 2.00E-123 | dispersed | |
Mch2g0127 | Mch-Chr2:962390 | Mch8g1031 | Mch-Chr8:7280075 | 2.55E-108 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42839 | PF00847 | AP2 | 2.60E-09 | CL0081 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch2g0127 | K09285 | - | csv:101207097 | 725.702 |