Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0130 ATGAGTGATCCCTCCTACTCCTACTCCATCAATGGCTCTTTTGGTCTCTACCCTCTTCACAATCACCACTACTTCTCTTCTTCTTCTTCATCATCTTCTTCTTCTTCTTCTTCTTATGATCATCACTTCTACTCTCTTTCCTACTCCAACAATGATCATCAAACCCTAAAAAACAGCTCCTTTTTCACACCCCATCAATTATTTTCCCCTCCCAATTCCTCCCCACAAGTCCTTCCCCTCCTAAGCTTAAGCCCTGCCAGAAATGTTGATCAAGATCACCACCAATCCTCCTCCTCCTCCATGGAGATTTCCAAGCAAGATCATGATGAGAGCAGTCATGTTACTGTGGCTTTGCATTTAGGGCTTCCAACTCCTCCTTCTGATCTGATCTTGAGGCTTTCTTCCACAGAGATCTCAGACAAAGAAGAAGAGGAAGTGGAAGAGGAAGAAGAAGATGAAGATCAGGAAGAAGAAGCTGCTCCTGTGGTTCCCAATTACTCCTCCTCACTCAACAAAGGCCAGTATTGGATTCCCACTCCTGCACAGATTCTCATTGGCCCCACTCAGTTCTCTTGCCCTCTTTGCTTCAAAACCTTCAATAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCTCAGTACAGGAAAGGGCCACAGTCGCTAAGAGGAACACAGCCAACAGCGATGCTGCGGCTGCCGTGCTACTGCTGCGCCCCTGGGTGCAGAAACAACATCGACCATCCCAGATCGAAGGCGCTGAAGGACTTCAGAACCCTTCAGACACACTACAAGAGAAAGCATGGGATGAAGCCCTTCAGCTGCAGGAAATGTGGGAAGGCGTTTGCTGTGAGAGGGGACTGGAGAACCCACGAGAAGAACTGTGGCAAGCTCTGGCACTGCACTTGTGGCTCTGACTTTAAGCACAAGAGATCCCTCAAGGACCACATTAAGGCCTTTGGCCATGGCCATGCTGCCTATGGCCTCGCCAATGCCAATGCCAATGCAACTCACTCCTTTCACGATCATTTGGATCATCGTCACCACCCTCCTCCTTTTGATACATCATAA 1074 48.42 MSDPSYSYSINGSFGLYPLHNHHYFSSSSSSSSSSSSSYDHHFYSLSYSNNDHQTLKNSSFFTPHQLFSPPNSSPQVLPLLSLSPARNVDQDHHQSSSSSMEISKQDHDESSHVTVALHLGLPTPPSDLILRLSSTEISDKEEEEVEEEEEDEDQEEEAAPVVPNYSSSLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAPGCRNNIDHPRSKALKDFRTLQTHYKRKHGMKPFSCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGLANANANATHSFHDHLDHRHHPPPFDTS 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 990887 993622 - MC02g0091 Mch2g0130 681052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0130 357 MobiDBLite consensus disorder prediction 88 112 - -
Mch2g0130 357 MobiDBLite consensus disorder prediction 140 159 - -
Mch2g0130 357 SMART c2h2final6 190 212 IPR013087 -
Mch2g0130 357 SMART c2h2final6 300 323 IPR013087 -
Mch2g0130 357 SMART c2h2final6 236 269 IPR013087 -
Mch2g0130 357 SMART c2h2final6 274 294 IPR013087 -
Mch2g0130 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 274 301 IPR013087 -
Mch2g0130 357 MobiDBLite consensus disorder prediction 137 166 - -
Mch2g0130 357 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 273 297 - -
Mch2g0130 357 SUPERFAMILY beta-beta-alpha zinc fingers 253 294 IPR036236 -
Mch2g0130 357 PANTHER ZINC FINGER PROTEIN WIP2 38 338 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Mch2g0130 357 Gene3D Classic Zinc Finger 247 328 - -
Mch2g0130 357 ProSitePatterns Zinc finger C2H2 type domain signature. 192 212 IPR013087 -
Mch2g0130 357 Coils Coil 138 159 - -
Mch2g0130 357 Gene3D Classic Zinc Finger 189 212 - -
Mch2g0130 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 190 217 IPR013087 -
Mch2g0130 357 FunFam Zinc finger protein WIP2 243 325 - -
Mch2g0130 357 Pfam Zinc finger, C2H2 type 190 209 IPR013087 -
Mch2g0130 357 MobiDBLite consensus disorder prediction 88 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0331 Mch-Chr1:7024604 Mch2g0130 Mch-Chr2:990887 2.51E-118 dispersed
Mch2g0130 Mch-Chr2:990887 Mch5g1409 Mch-Chr5:15143728 8.58E-121 dispersed
Mch3g0657 Mch-Chr3:11028229 Mch2g0130 Mch-Chr2:990887 4.05E-103 transposed
Mch2g0130 Mch-Chr2:990887 Mch9g0548 Mch-Chr9:3996173 1.02E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42840 None None None None Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0130 - - - 0.0