Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch2g0130 | ATGAGTGATCCCTCCTACTCCTACTCCATCAATGGCTCTTTTGGTCTCTACCCTCTTCACAATCACCACTACTTCTCTTCTTCTTCTTCATCATCTTCTTCTTCTTCTTCTTCTTATGATCATCACTTCTACTCTCTTTCCTACTCCAACAATGATCATCAAACCCTAAAAAACAGCTCCTTTTTCACACCCCATCAATTATTTTCCCCTCCCAATTCCTCCCCACAAGTCCTTCCCCTCCTAAGCTTAAGCCCTGCCAGAAATGTTGATCAAGATCACCACCAATCCTCCTCCTCCTCCATGGAGATTTCCAAGCAAGATCATGATGAGAGCAGTCATGTTACTGTGGCTTTGCATTTAGGGCTTCCAACTCCTCCTTCTGATCTGATCTTGAGGCTTTCTTCCACAGAGATCTCAGACAAAGAAGAAGAGGAAGTGGAAGAGGAAGAAGAAGATGAAGATCAGGAAGAAGAAGCTGCTCCTGTGGTTCCCAATTACTCCTCCTCACTCAACAAAGGCCAGTATTGGATTCCCACTCCTGCACAGATTCTCATTGGCCCCACTCAGTTCTCTTGCCCTCTTTGCTTCAAAACCTTCAATAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCTCAGTACAGGAAAGGGCCACAGTCGCTAAGAGGAACACAGCCAACAGCGATGCTGCGGCTGCCGTGCTACTGCTGCGCCCCTGGGTGCAGAAACAACATCGACCATCCCAGATCGAAGGCGCTGAAGGACTTCAGAACCCTTCAGACACACTACAAGAGAAAGCATGGGATGAAGCCCTTCAGCTGCAGGAAATGTGGGAAGGCGTTTGCTGTGAGAGGGGACTGGAGAACCCACGAGAAGAACTGTGGCAAGCTCTGGCACTGCACTTGTGGCTCTGACTTTAAGCACAAGAGATCCCTCAAGGACCACATTAAGGCCTTTGGCCATGGCCATGCTGCCTATGGCCTCGCCAATGCCAATGCCAATGCAACTCACTCCTTTCACGATCATTTGGATCATCGTCACCACCCTCCTCCTTTTGATACATCATAA | 1074 | 48.42 | MSDPSYSYSINGSFGLYPLHNHHYFSSSSSSSSSSSSSYDHHFYSLSYSNNDHQTLKNSSFFTPHQLFSPPNSSPQVLPLLSLSPARNVDQDHHQSSSSSMEISKQDHDESSHVTVALHLGLPTPPSDLILRLSSTEISDKEEEEVEEEEEDEDQEEEAAPVVPNYSSSLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAPGCRNNIDHPRSKALKDFRTLQTHYKRKHGMKPFSCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGLANANANATHSFHDHLDHRHHPPPFDTS | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 990887 | 993622 | - | MC02g0091 | Mch2g0130 | 681052 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch2g0130 | 357 | MobiDBLite | consensus disorder prediction | 88 | 112 | - | - | |
Mch2g0130 | 357 | MobiDBLite | consensus disorder prediction | 140 | 159 | - | - | |
Mch2g0130 | 357 | SMART | c2h2final6 | 190 | 212 | IPR013087 | - | |
Mch2g0130 | 357 | SMART | c2h2final6 | 300 | 323 | IPR013087 | - | |
Mch2g0130 | 357 | SMART | c2h2final6 | 236 | 269 | IPR013087 | - | |
Mch2g0130 | 357 | SMART | c2h2final6 | 274 | 294 | IPR013087 | - | |
Mch2g0130 | 357 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 274 | 301 | IPR013087 | - | |
Mch2g0130 | 357 | MobiDBLite | consensus disorder prediction | 137 | 166 | - | - | |
Mch2g0130 | 357 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 273 | 297 | - | - | |
Mch2g0130 | 357 | SUPERFAMILY | beta-beta-alpha zinc fingers | 253 | 294 | IPR036236 | - | |
Mch2g0130 | 357 | PANTHER | ZINC FINGER PROTEIN WIP2 | 38 | 338 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER) | |
Mch2g0130 | 357 | Gene3D | Classic Zinc Finger | 247 | 328 | - | - | |
Mch2g0130 | 357 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 192 | 212 | IPR013087 | - | |
Mch2g0130 | 357 | Coils | Coil | 138 | 159 | - | - | |
Mch2g0130 | 357 | Gene3D | Classic Zinc Finger | 189 | 212 | - | - | |
Mch2g0130 | 357 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 190 | 217 | IPR013087 | - | |
Mch2g0130 | 357 | FunFam | Zinc finger protein WIP2 | 243 | 325 | - | - | |
Mch2g0130 | 357 | Pfam | Zinc finger, C2H2 type | 190 | 209 | IPR013087 | - | |
Mch2g0130 | 357 | MobiDBLite | consensus disorder prediction | 88 | 102 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch1g0331 | Mch-Chr1:7024604 | Mch2g0130 | Mch-Chr2:990887 | 2.51E-118 | dispersed | |
Mch2g0130 | Mch-Chr2:990887 | Mch5g1409 | Mch-Chr5:15143728 | 8.58E-121 | dispersed | |
Mch3g0657 | Mch-Chr3:11028229 | Mch2g0130 | Mch-Chr2:990887 | 4.05E-103 | transposed | |
Mch2g0130 | Mch-Chr2:990887 | Mch9g0548 | Mch-Chr9:3996173 | 1.02E-109 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42840 | None | None | None | None | Mch | TF |
Pathway information
