Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0147 ATGGTATCTGACAGGCATCATTGTCCAGAAGGTATGCATTCAAAATCTAAAAGTGTGAATCAACTAGAATCTGAACCACCAAATATGCAGCAGACTGGTAGTTATTCTGAACCTTGGTGGCGCAGTATTGGGTACAATCCTATCTCCCCGCCAGCAGCAGGAGGAAATGTGTCCAATTCAACATCACTGGAATGCACTAATGGTGCTTCCGAATCTAATGAGGGTCAGTCGATGTCAAATGATGATTTGAATGAAGAAGACGATGATGATAACACAAAAGACTCACAAGCTGCAAGTTATGGGCAAGAACAGCACAACACCCAGCGTGCTGTTTCAACTGCACCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTGGAACTTGTAGGCCACAATATAGCGTGTGCATCAAATCCATATCAAGATCCTTATTATCCAGGACTGATGACTGCCTATGGGCATCAACCTTTGGGTTATCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTCTGCCCCTTGAGGTGACACAGGAGCCAGTTTTTGTGAATGCCAAACAATACCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTCGAGAATAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAGTCTCGTCACCAGCATGCCATGAGAAGGGCAAGGGGTAGTGGAGGACGTTTTGCCAAGAAGAGTGAAGTTAATTCTTCGTGCTCTACTATGAAGGATAAGGAATGTGGATCTGGTCAAGCTATCTCATCGCACTCAGCTAGTTCATCTGGTTCTGAAGCTGTGCCTCGTGTCTTGGCTGAAACCTGGAATTCCTCCAATGGTCAACAAGAAGCAAGGACGCAGTTGCATGAGACATATGAAGCTCGTACTTATGTAAATGGCAGTAGCCATTTTCAAAACTACAGTAGCTTCCAAGCTTCATCATATGCTTTACGTACTGGCGAGAGAGGTGAAGATGGAGACTGTTCGGGACAGCAACGAGGAAGTATCTCAGAAAATCAGGCGGCACAGAGGCGTCTTGCCATTAAGTGA 1068 45.41 MVSDRHHCPEGMHSKSKSVNQLESEPPNMQQTGSYSEPWWRSIGYNPISPPAAGGNVSNSTSLECTNGASESNEGQSMSNDDLNEEDDDDNTKDSQAASYGQEQHNTQRAVSTAPTVHGGCITQPPQLELVGHNIACASNPYQDPYYPGLMTAYGHQPLGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKSEVNSSCSTMKDKECGSGQAISSHSASSSGSEAVPRVLAETWNSSNGQQEARTQLHETYEARTYVNGSSHFQNYSSFQASSYALRTGERGEDGDCSGQQRGSISENQAAQRRLAIK 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1108745 1115923 + MC02g0107 Mch2g0147 681069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0147 355 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 181 236 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0147 355 MobiDBLite consensus disorder prediction 52 79 - -
Mch2g0147 355 MobiDBLite consensus disorder prediction 238 273 - -
Mch2g0147 355 MobiDBLite consensus disorder prediction 1 112 - -
Mch2g0147 355 SMART cbf3 178 239 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0147 355 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 30 297 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Mch2g0147 355 MobiDBLite consensus disorder prediction 95 112 - -
Mch2g0147 355 MobiDBLite consensus disorder prediction 325 355 - -
Mch2g0147 355 ProSiteProfiles NF-YA/HAP2 family profile. 179 239 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0147 355 MobiDBLite consensus disorder prediction 219 273 - -
Mch2g0147 355 Gene3D - 179 241 - -
Mch2g0147 355 ProSitePatterns NF-YA/HAP2 subunit signature. 184 204 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Mch2g0147 355 PRINTS CCAAT-binding transcription factor subunit B signature 182 204 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0147 355 PRINTS CCAAT-binding transcription factor subunit B signature 213 236 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0147 355 MobiDBLite consensus disorder prediction 219 233 - -
Mch2g0147 355 MobiDBLite consensus disorder prediction 14 39 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0147 K08064 - - csv:101212961 570.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0375 Mch-Chr1:7637910 Mch2g0147 Mch-Chr2:1108745 1.57E-27 dispersed
Mch1g2090 Mch-Chr1:20281816 Mch2g0147 Mch-Chr2:1108745 9.82E-32 dispersed
Mch2g0147 Mch-Chr2:1108745 Mch5g1530 Mch-Chr5:16294607 2.18E-25 dispersed
Mch2g0147 Mch-Chr2:1108745 Mch6g1159 Mch-Chr6:8751756 2.32E-95 wgd
Mch2g0147 Mch-Chr2:1108745 Mch9g0559 Mch-Chr9:4082808 1.91E-36 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch2g0147 . 29 284 CCAAT-HAP2 Transcription Factor Family AT5G12840 52.3 9.7e-57 217.2
Mch2g0147 . 116 356 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.7 2.6e-50 196.1
Mch6g1159 . 3 239 CCAAT-HAP2 Transcription Factor Family AT3G20910 53.3 5.4e-48 188.3
Mch1g2090 . 1 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.7 3.4e-48 188.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42843 PF02045 CBFB_NFYA 2.00E-26 No_clan Mch TF