Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch2g0147 | ATGGTATCTGACAGGCATCATTGTCCAGAAGGTATGCATTCAAAATCTAAAAGTGTGAATCAACTAGAATCTGAACCACCAAATATGCAGCAGACTGGTAGTTATTCTGAACCTTGGTGGCGCAGTATTGGGTACAATCCTATCTCCCCGCCAGCAGCAGGAGGAAATGTGTCCAATTCAACATCACTGGAATGCACTAATGGTGCTTCCGAATCTAATGAGGGTCAGTCGATGTCAAATGATGATTTGAATGAAGAAGACGATGATGATAACACAAAAGACTCACAAGCTGCAAGTTATGGGCAAGAACAGCACAACACCCAGCGTGCTGTTTCAACTGCACCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTGGAACTTGTAGGCCACAATATAGCGTGTGCATCAAATCCATATCAAGATCCTTATTATCCAGGACTGATGACTGCCTATGGGCATCAACCTTTGGGTTATCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTCTGCCCCTTGAGGTGACACAGGAGCCAGTTTTTGTGAATGCCAAACAATACCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTCGAGAATAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAGTCTCGTCACCAGCATGCCATGAGAAGGGCAAGGGGTAGTGGAGGACGTTTTGCCAAGAAGAGTGAAGTTAATTCTTCGTGCTCTACTATGAAGGATAAGGAATGTGGATCTGGTCAAGCTATCTCATCGCACTCAGCTAGTTCATCTGGTTCTGAAGCTGTGCCTCGTGTCTTGGCTGAAACCTGGAATTCCTCCAATGGTCAACAAGAAGCAAGGACGCAGTTGCATGAGACATATGAAGCTCGTACTTATGTAAATGGCAGTAGCCATTTTCAAAACTACAGTAGCTTCCAAGCTTCATCATATGCTTTACGTACTGGCGAGAGAGGTGAAGATGGAGACTGTTCGGGACAGCAACGAGGAAGTATCTCAGAAAATCAGGCGGCACAGAGGCGTCTTGCCATTAAGTGA | 1068 | 45.41 | MVSDRHHCPEGMHSKSKSVNQLESEPPNMQQTGSYSEPWWRSIGYNPISPPAAGGNVSNSTSLECTNGASESNEGQSMSNDDLNEEDDDDNTKDSQAASYGQEQHNTQRAVSTAPTVHGGCITQPPQLELVGHNIACASNPYQDPYYPGLMTAYGHQPLGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKSEVNSSCSTMKDKECGSGQAISSHSASSSGSEAVPRVLAETWNSSNGQQEARTQLHETYEARTYVNGSSHFQNYSSFQASSYALRTGERGEDGDCSGQQRGSISENQAAQRRLAIK | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1108745 | 1115923 | + | MC02g0107 | Mch2g0147 | 681069 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch2g0147 | 355 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 181 | 236 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0147 | 355 | MobiDBLite | consensus disorder prediction | 52 | 79 | - | - | |
Mch2g0147 | 355 | MobiDBLite | consensus disorder prediction | 238 | 273 | - | - | |
Mch2g0147 | 355 | MobiDBLite | consensus disorder prediction | 1 | 112 | - | - | |
Mch2g0147 | 355 | SMART | cbf3 | 178 | 239 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0147 | 355 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 30 | 297 | IPR001289 | GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Mch2g0147 | 355 | MobiDBLite | consensus disorder prediction | 95 | 112 | - | - | |
Mch2g0147 | 355 | MobiDBLite | consensus disorder prediction | 325 | 355 | - | - | |
Mch2g0147 | 355 | ProSiteProfiles | NF-YA/HAP2 family profile. | 179 | 239 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0147 | 355 | MobiDBLite | consensus disorder prediction | 219 | 273 | - | - | |
Mch2g0147 | 355 | Gene3D | - | 179 | 241 | - | - | |
Mch2g0147 | 355 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 184 | 204 | IPR018362 | GO:0003677(InterPro)|GO:0016602(InterPro) | |
Mch2g0147 | 355 | PRINTS | CCAAT-binding transcription factor subunit B signature | 182 | 204 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0147 | 355 | PRINTS | CCAAT-binding transcription factor subunit B signature | 213 | 236 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0147 | 355 | MobiDBLite | consensus disorder prediction | 219 | 233 | - | - | |
Mch2g0147 | 355 | MobiDBLite | consensus disorder prediction | 14 | 39 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch1g0375 | Mch-Chr1:7637910 | Mch2g0147 | Mch-Chr2:1108745 | 1.57E-27 | dispersed | |
Mch1g2090 | Mch-Chr1:20281816 | Mch2g0147 | Mch-Chr2:1108745 | 9.82E-32 | dispersed | |
Mch2g0147 | Mch-Chr2:1108745 | Mch5g1530 | Mch-Chr5:16294607 | 2.18E-25 | dispersed | |
Mch2g0147 | Mch-Chr2:1108745 | Mch6g1159 | Mch-Chr6:8751756 | 2.32E-95 | wgd | |
Mch2g0147 | Mch-Chr2:1108745 | Mch9g0559 | Mch-Chr9:4082808 | 1.91E-36 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42843 | PF02045 | CBFB_NFYA | 2.00E-26 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch2g0147 | K08064 | - | csv:101212961 | 570.081 |