Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0147 ATGGTATCTGACAGGCATCATTGTCCAGAAGGTATGCATTCAAAATCTAAAAGTGTGAATCAACTAGAATCTGAACCACCAAATATGCAGCAGACTGGTAGTTATTCTGAACCTTGGTGGCGCAGTATTGGGTACAATCCTATCTCCCCGCCAGCAGCAGGAGGAAATGTGTCCAATTCAACATCACTGGAATGCACTAATGGTGCTTCCGAATCTAATGAGGGTCAGTCGATGTCAAATGATGATTTGAATGAAGAAGACGATGATGATAACACAAAAGACTCACAAGCTGCAAGTTATGGGCAAGAACAGCACAACACCCAGCGTGCTGTTTCAACTGCACCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTGGAACTTGTAGGCCACAATATAGCGTGTGCATCAAATCCATATCAAGATCCTTATTATCCAGGACTGATGACTGCCTATGGGCATCAACCTTTGGGTTATCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTCTGCCCCTTGAGGTGACACAGGAGCCAGTTTTTGTGAATGCCAAACAATACCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTCGAGAATAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAGTCTCGTCACCAGCATGCCATGAGAAGGGCAAGGGGTAGTGGAGGACGTTTTGCCAAGAAGAGTGAAGTTAATTCTTCGTGCTCTACTATGAAGGATAAGGAATGTGGATCTGGTCAAGCTATCTCATCGCACTCAGCTAGTTCATCTGGTTCTGAAGCTGTGCCTCGTGTCTTGGCTGAAACCTGGAATTCCTCCAATGGTCAACAAGAAGCAAGGACGCAGTTGCATGAGACATATGAAGCTCGTACTTATGTAAATGGCAGTAGCCATTTTCAAAACTACAGTAGCTTCCAAGCTTCATCATATGCTTTACGTACTGGCGAGAGAGGTGAAGATGGAGACTGTTCGGGACAGCAACGAGGAAGTATCTCAGAAAATCAGGCGGCACAGAGGCGTCTTGCCATTAAGTGA 1068 45.41 MVSDRHHCPEGMHSKSKSVNQLESEPPNMQQTGSYSEPWWRSIGYNPISPPAAGGNVSNSTSLECTNGASESNEGQSMSNDDLNEEDDDDNTKDSQAASYGQEQHNTQRAVSTAPTVHGGCITQPPQLELVGHNIACASNPYQDPYYPGLMTAYGHQPLGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKSEVNSSCSTMKDKECGSGQAISSHSASSSGSEAVPRVLAETWNSSNGQQEARTQLHETYEARTYVNGSSHFQNYSSFQASSYALRTGERGEDGDCSGQQRGSISENQAAQRRLAIK 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1108745 1115923 + MC02g0107 Mch2g0147 681069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0147 355 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 181 236 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0147 355 MobiDBLite consensus disorder prediction 52 79 - -
Mch2g0147 355 MobiDBLite consensus disorder prediction 238 273 - -
Mch2g0147 355 MobiDBLite consensus disorder prediction 1 112 - -
Mch2g0147 355 SMART cbf3 178 239 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0147 355 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 30 297 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Mch2g0147 355 MobiDBLite consensus disorder prediction 95 112 - -
Mch2g0147 355 MobiDBLite consensus disorder prediction 325 355 - -
Mch2g0147 355 ProSiteProfiles NF-YA/HAP2 family profile. 179 239 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0147 355 MobiDBLite consensus disorder prediction 219 273 - -
Mch2g0147 355 Gene3D - 179 241 - -
Mch2g0147 355 ProSitePatterns NF-YA/HAP2 subunit signature. 184 204 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Mch2g0147 355 PRINTS CCAAT-binding transcription factor subunit B signature 182 204 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0147 355 PRINTS CCAAT-binding transcription factor subunit B signature 213 236 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0147 355 MobiDBLite consensus disorder prediction 219 233 - -
Mch2g0147 355 MobiDBLite consensus disorder prediction 14 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0375 Mch-Chr1:7637910 Mch2g0147 Mch-Chr2:1108745 1.57E-27 dispersed
Mch1g2090 Mch-Chr1:20281816 Mch2g0147 Mch-Chr2:1108745 9.82E-32 dispersed
Mch2g0147 Mch-Chr2:1108745 Mch5g1530 Mch-Chr5:16294607 2.18E-25 dispersed
Mch2g0147 Mch-Chr2:1108745 Mch6g1159 Mch-Chr6:8751756 2.32E-95 wgd
Mch2g0147 Mch-Chr2:1108745 Mch9g0559 Mch-Chr9:4082808 1.91E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42843 PF02045 CBFB_NFYA 2.00E-26 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0147 K08064 - csv:101212961 570.081