Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0203 ATGGCTGCTCGCGCTGTTGTTCCTCAGCGACACATGCGACTCAGAGGTGAAGTTAAGCCAAAGATGGTAGCTGCTGAAGGAAGAACCAGGCGAGTTCTTAAAGACATAGGCAATCTGGTGCCTGATGGAGCCGTGGAAGGGGGGAAACCCGGGCCTCAACCAGCAGAGAAGAACAAGAAAGCAATCAGCAAAAAACTGGAGGGGGCGGTGAAGGGTGGCGATGTGGCGAAGGCTGCTGTGACTCAGAAGTGCAAAGCTGAGAAACAACTCACTGTTCTCCGCTCCGCCAATGAGAGAAATATAATCATTATCAGCGATACTAAATCGAGAGACAAGAACAAGAAGTCCCTGACTTCAACCCTCAGTGCCAGAAGCAAGGCTGCTTGTGGACTTACCAATAATCCACGGGATTCAGTAGCTAATATTGATGCAGCAGACGCTAACAACGAACTGGCAGTAGTTGAATACATCGATGACATGTACAAGTTTTACAAGCTTGCAGAAGATGAGAGTAGGGTATCGGATTACATGGGTTCACAGCCAGATCTGAATGCTAAGATGAGATCTATCCTCGTAGATTGGTTGATAGAAGTTCATCGCAAGTTTGACCTGATGCCGGAAACCCTTTACCTCACTGTAAACATTGTCGACAGATTCCTCTCTTTGAAGACCGTGCCAAGGAGGGAACTTCAATTAGTAGGCATCAGCTCTATGCTAATAGCATGTAAATATGAAGAGATTTGGGCTCCGGAGGTCAATGATTTTGTGAATATATCTGCTAATACTTACCAAAGAGAACAGATTCTAGCGATGGAGAAAACAATTTTGGGCAGGCTGGAATGGCTCCTTACAGTTCCTACACCTTATGTTTTTCTTGTTCGATATGTTAAGGCTTCTGACTCGTCTGATGAGGAGGTGGAGAACATGGTATTTTTTCTGGCTGAGCTCGGTGTGATGAACTATCCCGTAGCAACATCATACAGCCCTTCAATGATTGCTTCAGCTGCTGTTTATGCTGCACGGCGCACCCTTCATAAGAGCCCTGTCTGGACAGCAACTCTGCAGCACCATACAGGCTATGTTGAAGATGAGTTGAAGGAATGCGCGGAACTCCTGGTGAACCTGCACCGTGGAGTTGCAGATGGCAAGCTCAAGGCCGTGTACAGAAAATATTCGAGTCCAGATCGTGGTGCAATTGCTCTTCTTCCTCCAGCTAAAAGTCCAAGTGAAGAAAATGTATGA 1242 46.62 MAARAVVPQRHMRLRGEVKPKMVAAEGRTRRVLKDIGNLVPDGAVEGGKPGPQPAEKNKKAISKKLEGAVKGGDVAKAAVTQKCKAEKQLTVLRSANERNIIIISDTKSRDKNKKSLTSTLSARSKAACGLTNNPRDSVANIDAADANNELAVVEYIDDMYKFYKLAEDESRVSDYMGSQPDLNAKMRSILVDWLIEVHRKFDLMPETLYLTVNIVDRFLSLKTVPRRELQLVGISSMLIACKYEEIWAPEVNDFVNISANTYQREQILAMEKTILGRLEWLLTVPTPYVFLVRYVKASDSSDEEVENMVFFLAELGVMNYPVATSYSPSMIASAAVYAARRTLHKSPVWTATLQHHTGYVEDELKECAELLVNLHRGVADGKLKAVYRKYSSPDRGAIALLPPAKSPSEENV 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1533033 1537223 - MC02g0154 Mch2g0203 681125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0203 413 SUPERFAMILY Cyclin-like 287 407 IPR036915 -
Mch2g0203 413 Gene3D - 173 284 - -
Mch2g0203 413 FunFam G2/mitotic-specific cyclin-1 280 400 - -
Mch2g0203 413 CDD CYCLIN_AtCycB-like_rpt1 137 281 - -
Mch2g0203 413 SUPERFAMILY Cyclin-like 148 281 IPR036915 -
Mch2g0203 413 Pfam Cyclin, C-terminal domain 286 404 IPR004367 -
Mch2g0203 413 PANTHER CYCLINS 137 392 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Mch2g0203 413 SMART Cyclin_C_2 286 405 IPR004367 -
Mch2g0203 413 Gene3D - 159 400 - -
Mch2g0203 413 FunFam G2/mitotic-specific cyclin 172 279 - -
Mch2g0203 413 PIRSF Cyclin_A_B_D_E 2 413 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Mch2g0203 413 ProSitePatterns Cyclins signature. 188 219 IPR048258 -
Mch2g0203 413 Pfam Cyclin, N-terminal domain 159 283 IPR006671 -
Mch2g0203 413 CDD CYCLIN_AtCycB-like_rpt2 286 404 - -
Mch2g0203 413 SMART cyclin_7 290 374 IPR013763 -
Mch2g0203 413 SMART cyclin_7 193 277 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0470 Mch-Chr1:9148953 Mch2g0203 Mch-Chr2:1533033 7.32E-133 dispersed
Mch2g0203 Mch-Chr2:1533033 Mch4g0020 Mch-Chr4:140663 2.52E-69 dispersed
Mch2g0203 Mch-Chr2:1533033 Mch11g0059 Mch-Chr11:387350 2.03E-79 transposed
Mch2g0203 Mch-Chr2:1533033 Mch1g1647 Mch-Chr1:17393279 3.97E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0203 K21777 - csv:101222873 637.876