Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0211 ATGGCGGATATTAGGAAATGGTTCATGAAAGCACACGACAAAGACAATGGCAGTGCGTTGAAGCATGCAAAGCCTGCTGCAAGCAATTCAGAGAAAGCTGCTACAGCCGAACCACAGTCCGGAAAAACAGGGCTGAGTGGTGGGGAAAGTACTGGCAGAAGGATAACTAGTAAGTACTTTGCCTCAGAAAAGCAGAAGTCCAAGGACGCAAAAGAAATAGAGGGACTCCCGATCAAAAGAAAGTCTCCACAGGATGCGAAGGAATCACCAGCCAAAAGAAAGTCTCAAAAAGATAGTGAGGAATCACCGAAAGCTCCACCTTCAAAAAAATTAAACAAAACTGATGACAACGACGATGATTTTGTTTTGTCTAGTTCTAGAAAGAACTTGTCTGACGTCACTCCCAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACTCAGAAACCTGTAGAGATTGAAGAAAGTGATGACGAGGAAGCTAAAGGTACCGAGTCTTCTCTGAAGCCTAGTGGAAGGGGTAGGGGGGCAAGGGGTTCATCTGCTGCAACTGTTAGTGGTAGAGGCAGAGGCGGTGGACGGGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGCGCTCCTGACTGTTTAGCTGGACTAACTTTTGTAATTAGTGGAACCCTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGACGCATAACTGGATCTATCAGCAAAAAAACAAATTATCTACTATGTGATGAAGATATTGGGGGTCGAAAATCTTCCAAAGCTAAAGAGCTGGGAACTGCTTTTCTCACTGAGGATGGCTTATTTGACATGATCCGTGCATCATCCGACACTAAAGCTCCTCCAAGACAAGAATCTAAAAAATCTGTTGTTAAGTCCTTGGAATCTCCAACAGAGAAAAACTCCCAAAAAGTACCAGCAGTACAAGCAAAGACGCGCAAAGATTTTACTGCTGGTGCTTCACCTGCTAAGCAAAAAAGTCGAACAGTTGAATTTTCTTCCCTAACATGGACTGAAAAATATAGGCCAAAGGTTTCAAACGACATTATAGGAAACCAGTCACTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACGAGAACTTTTTTGATGCTCAAAGCAAAAAGAAGGGTAAAAAGCTCAATGATTCCAGTGCTAAAAAAGCTGTCTTATTATGTGGAGGTCCTGGCATAGGTAAAACTACGTCGGCTAAGTTGGTTAGCCAGATGCTTGGATATCAGGCTATAGAGGTAAATGCCAGTGACAATCGGGGTAAATCAGATGCAAAAATTCAAAAGGGAATTAGTGGAAGCAATGCGAATTCCATAAAGGAGCTCATCAGCAATGAATCTCTGCATTTCAGAACGAATCAGCCAAAACGTCCCAAAACTGTGTTGATTATGGATGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCGAGTATTAAAACCTCCAAAATTCCAATTATCTGCATCTGTAATGACCGTTACAGCCAGAAGCTGAAAAGCCTTGTGAACTACTGTCTGATTCTCAGCTTTAGAAAGCCTACAAAACAACAGATGGCAAAAAGATTCATGCAAGTTGCAAATGCAGAGGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCGGAAAGAGTTAATGGGGATATGCGCATGGCACTAAATCAGTTGCAGTACATGAGTCTGTCAATGCCAGTTATTAAATATGATGATATTCGCCAACGACTTCTGAGCAGTATGAAAGATGAAGACATCTCACCATTCACTGCCGTTGATAAGCTGTTTGGTTTTAATTCTGGGAAGTTAAGGATGGACGAATGGGTAAATCTCAGCATGAGTGATCCTGATCTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTATAGGCCAAGTTCTGTTAGTAAGGATGACAATGGGATCAAACGGATGGATTTGATTGCTCGTGCAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGGCAGTGGCAACTCTCTCAAAGTAGTTCTATTGCTTCTTGTATAATCCCAGCTTCATTACTGCACGGGCAAAGAGAAACACTTGAACAGGGAGAGCGTAATTTTAATAGATTTAGTGCATGGCTGGGAAAAAATTCGACATTTGGAAAAAATATGAGGCTTTTGGAGGATTTGCATGTTCACATTCTTGCTTCTCGTGAATCCTGTTCAGGGAGACAACACCTACGAGTTGAGAACCTTACTCTATTTCTAAAGAGGTTGACTGAGCCACTGCACACTCTGCCGAAGGATGAAGCTGTTAAAATGGTTGTAGAATTAATGAGTCTATATTCAATTAGTCAAGAGGATTTTGATACTGTTGTGGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCGTTGGATGGTGTAGCCCCTGCTGTCAAAGCTGCTCTAACAAAGGCATACAAAGAAGTAAGCAAGACACACATGGTGCGGGCTGCAGATCTTATTACACTTACTGGAATTAAAAAGGCCCCCAAGAAGCGAATTGCAGCAATTCTAGAACCGGCTGAGGATACAATTGAGGGTGCTGGTGGAGACACATTGGCCGAAAGTGACGATGAGGACGCTTTGGACAACGAGGGCGCGGAAGACTCCACAAACGGTGAGAAGCTGCAACTGGAACTTCAAAGCTTGAATAAGAAAGGAATGCAAGTGCAATTGGATTTGAAGGGCGTGGATAATTCAAGCGCCAAGAAATCCGGTGGCAGAGGAAAAGGTGGCCGTAGTAGTTCGCAGGCTTCAGAGAAGAAAGGAGGGGGGCGAGGGCGAGGTTCGGGATCTGCCACCAAGAGGAAAAGATAA 2943 43.09 MADIRKWFMKAHDKDNGSALKHAKPAASNSEKAATAEPQSGKTGLSGGESTGRRITSKYFASEKQKSKDAKEIEGLPIKRKSPQDAKESPAKRKSQKDSEESPKAPPSKKLNKTDDNDDDFVLSSSRKNLSDVTPNKKLKSGSGKGITQKPVEIEESDDEEAKGTESSLKPSGRGRGARGSSAATVSGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSISKKTNYLLCDEDIGGRKSSKAKELGTAFLTEDGLFDMIRASSDTKAPPRQESKKSVVKSLESPTEKNSQKVPAVQAKTRKDFTAGASPAKQKSRTVEFSSLTWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFFDAQSKKKGKKLNDSSAKKAVLLCGGPGIGKTTSAKLVSQMLGYQAIEVNASDNRGKSDAKIQKGISGSNANSIKELISNESLHFRTNQPKRPKTVLIMDEVDGMSAGDRGGVADLIASIKTSKIPIICICNDRYSQKLKSLVNYCLILSFRKPTKQQMAKRFMQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYMSLSMPVIKYDDIRQRLLSSMKDEDISPFTAVDKLFGFNSGKLRMDEWVNLSMSDPDLVPLLIQENYINYRPSSVSKDDNGIKRMDLIARAAESIADGDIINVQIRRHRQWQLSQSSSIASCIIPASLLHGQRETLEQGERNFNRFSAWLGKNSTFGKNMRLLEDLHVHILASRESCSGRQHLRVENLTLFLKRLTEPLHTLPKDEAVKMVVELMSLYSISQEDFDTVVELSKFQGRKNPLDGVAPAVKAALTKAYKEVSKTHMVRAADLITLTGIKKAPKKRIAAILEPAEDTIEGAGGDTLAESDDEDALDNEGAEDSTNGEKLQLELQSLNKKGMQVQLDLKGVDNSSAKKSGGRGKGGRSSSQASEKKGGGRGRGSGSATKRKR 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1586082 1599568 - MC02g0162 Mch2g0211 681133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0211 980 MobiDBLite consensus disorder prediction 202 217 - -
Mch2g0211 980 SUPERFAMILY post-AAA+ oligomerization domain-like 618 763 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Mch2g0211 980 CDD HLD_clamp_RFC 547 605 IPR047854 -
Mch2g0211 980 MobiDBLite consensus disorder prediction 894 909 - -
Mch2g0211 980 MobiDBLite consensus disorder prediction 126 143 - -
Mch2g0211 980 Gene3D - 619 729 - -
Mch2g0211 980 SMART BRCT_7 220 298 IPR001357 -
Mch2g0211 980 MobiDBLite consensus disorder prediction 303 317 - -
Mch2g0211 980 MobiDBLite consensus disorder prediction 1 20 - -
Mch2g0211 980 FunFam Replication factor C subunit 1 194 297 - -
Mch2g0211 980 CDD AAA 399 547 - -
Mch2g0211 980 Gene3D - 547 617 - -
Mch2g0211 980 MobiDBLite consensus disorder prediction 32 58 - -
Mch2g0211 980 Gene3D BRCT domain 195 297 IPR036420 -
Mch2g0211 980 Pfam ATPase family associated with various cellular activities (AAA) 414 526 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch2g0211 980 Gene3D - 358 546 IPR027417 -
Mch2g0211 980 SUPERFAMILY BRCT domain 218 297 IPR036420 -
Mch2g0211 980 SMART AAA_5 410 548 IPR003593 GO:0016887(InterPro)
Mch2g0211 980 PIRSF RFC1 1 950 IPR012178 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)
Mch2g0211 980 MobiDBLite consensus disorder prediction 59 125 - -
Mch2g0211 980 FunFam Replication factor C subunit 1 619 728 - -
Mch2g0211 980 FunFam Replication factor C subunit 1 358 546 - -
Mch2g0211 980 ProSiteProfiles BRCT domain profile. 218 296 IPR001357 -
Mch2g0211 980 CDD BRCT_RFC1 218 296 - -
Mch2g0211 980 Pfam BRCA1 C Terminus (BRCT) domain 220 295 IPR001357 -
Mch2g0211 980 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 607 IPR027417 -
Mch2g0211 980 MobiDBLite consensus disorder prediction 887 980 - -
Mch2g0211 980 Pfam Replication factor RFC1 C terminal domain 687 849 IPR013725 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)
Mch2g0211 980 MobiDBLite consensus disorder prediction 298 348 - -
Mch2g0211 980 MobiDBLite consensus disorder prediction 1 219 - -
Mch2g0211 980 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 93 944 - GO:0003677(PANTHER)|GO:0005634(PANTHER)
Mch2g0211 980 MobiDBLite consensus disorder prediction 916 940 - -
Mch2g0211 980 MobiDBLite consensus disorder prediction 151 167 - -
Mch2g0211 980 FunFam Replication factor C subunit 1 547 618 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0211 Mch-Chr2:1586082 Mch5g0181 Mch-Chr5:1160573 2.64E-19 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0211 K10754 - csv:101204361 1553.5