Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0212 ATGTCACTGGACATGATGGCATCGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAATAGCATGTTTACACTGGTGACTGTGAGATGTGGGCATTGTTCAAATCTGCTGTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCCCAAGATTCTTCGCAACAGGGTCATAAACAGCAGCAAGTTAGCAGTACTGGGGATTCGAGCAAAGAGAGAGGGTCTTCGTCTTCAAAATGCTCAAAAATTGACTCTGCTGAGCGTGACCAACACAGAATCCCTCCTATTCGCCCACCGGAGAAAAGACAGCGTGTTCCTTCTGCGTATAACAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAAAAATCCTGACATTAGCCATAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCACATCCACTTTGGACTGAAGCTGGATGGAAATAAGCAATCAAATTAA 510 43.92 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGHKQQQVSSTGDSSKERGSSSSKCSKIDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQSN 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1603611 1610212 + MC02g0163 Mch2g0212 681134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0212 169 FunFam axial regulator YABBY 5-like 98 156 - -
Mch2g0212 169 CDD HMG-box_SF 114 150 - -
Mch2g0212 169 Gene3D High mobility group box domain 95 155 IPR036910 -
Mch2g0212 169 PANTHER PROTEIN YABBY 6-RELATED 6 167 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
Mch2g0212 169 Pfam YABBY protein 7 160 IPR006780 GO:0007275(InterPro)
Mch2g0212 169 MobiDBLite consensus disorder prediction 85 109 - -
Mch2g0212 169 SUPERFAMILY HMG-box 105 153 IPR036910 -
Mch2g0212 169 MobiDBLite consensus disorder prediction 57 117 - -
Mch2g0212 169 MobiDBLite consensus disorder prediction 57 84 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0212 K25796 - - csv:101222154 287.345
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0212 Mch-Chr2:1603611 Mch6g0711 Mch-Chr6:4887665 1.39E-55 dispersed
Mch2g0212 Mch-Chr2:1603611 Mch8g3074 Mch-Chr8:33217996 6.68E-60 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g2062 . 16 171 C2C2-YABBY Transcription Factor Family AT1G69180 62.2 8.0e-47 183.7
Mch6g1777 . 74 233 C2C2-YABBY Transcription Factor Family AT2G45190 59.8 2.0e-44 175.6
Mch2g0212 . 1 167 C2C2-YABBY Transcription Factor Family AT1G08465 67.6 6.6e-57 217.2
Mch6g1777 . 30 222 C2C2-YABBY Transcription Factor Family AT1G08465 52.0 2.9e-44 175.3
Mch6g0711 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 53.6 4.9e-44 174.5
Mch8g3074 . 5 181 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 4.2e-43 171.4
Mch6g1777 . 41 231 C2C2-YABBY Transcription Factor Family AT4G00180 54.6 4.7e-51 198.0
Mch9g2254 . 1 177 C2C2-YABBY Transcription Factor Family AT1G23420 53.0 1.5e-41 166.8
Mch6g0711 . 7 175 C2C2-YABBY Transcription Factor Family AT2G26580 71.6 6.1e-62 233.8
Mch8g3074 . 10 172 C2C2-YABBY Transcription Factor Family AT2G26580 72.6 2.3e-61 231.9
Mch2g0212 . 1 168 C2C2-YABBY Transcription Factor Family AT2G26580 60.5 2.7e-49 191.8
Mch6g1777 . 30 195 C2C2-YABBY Transcription Factor Family AT2G26580 53.8 5.7e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004363 1 4 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 1 2 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42848 PF04690 YABBY 7.30E-74 CL0114 Mch TF