Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch2g0212 | ATGTCACTGGACATGATGGCATCGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAATAGCATGTTTACACTGGTGACTGTGAGATGTGGGCATTGTTCAAATCTGCTGTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCCCAAGATTCTTCGCAACAGGGTCATAAACAGCAGCAAGTTAGCAGTACTGGGGATTCGAGCAAAGAGAGAGGGTCTTCGTCTTCAAAATGCTCAAAAATTGACTCTGCTGAGCGTGACCAACACAGAATCCCTCCTATTCGCCCACCGGAGAAAAGACAGCGTGTTCCTTCTGCGTATAACAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAAAAATCCTGACATTAGCCATAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCACATCCACTTTGGACTGAAGCTGGATGGAAATAAGCAATCAAATTAA | 510 | 43.92 | MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGHKQQQVSSTGDSSKERGSSSSKCSKIDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQSN | 169 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1603611 | 1610212 | + | MC02g0163 | Mch2g0212 | 681134 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch2g0212 | 169 | FunFam | axial regulator YABBY 5-like | 98 | 156 | - | - | |
Mch2g0212 | 169 | CDD | HMG-box_SF | 114 | 150 | - | - | |
Mch2g0212 | 169 | Gene3D | High mobility group box domain | 95 | 155 | IPR036910 | - | |
Mch2g0212 | 169 | PANTHER | PROTEIN YABBY 6-RELATED | 6 | 167 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER) | |
Mch2g0212 | 169 | Pfam | YABBY protein | 7 | 160 | IPR006780 | GO:0007275(InterPro) | |
Mch2g0212 | 169 | MobiDBLite | consensus disorder prediction | 85 | 109 | - | - | |
Mch2g0212 | 169 | SUPERFAMILY | HMG-box | 105 | 153 | IPR036910 | - | |
Mch2g0212 | 169 | MobiDBLite | consensus disorder prediction | 57 | 117 | - | - | |
Mch2g0212 | 169 | MobiDBLite | consensus disorder prediction | 57 | 84 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0212 | Mch-Chr2:1603611 | Mch6g0711 | Mch-Chr6:4887665 | 1.39E-55 | dispersed | |
Mch2g0212 | Mch-Chr2:1603611 | Mch8g3074 | Mch-Chr8:33217996 | 6.68E-60 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42848 | PF04690 | YABBY | 7.30E-74 | CL0114 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch2g0212 | K25796 | - | csv:101222154 | 287.345 |