Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0212 ATGTCACTGGACATGATGGCATCGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAATAGCATGTTTACACTGGTGACTGTGAGATGTGGGCATTGTTCAAATCTGCTGTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCCCAAGATTCTTCGCAACAGGGTCATAAACAGCAGCAAGTTAGCAGTACTGGGGATTCGAGCAAAGAGAGAGGGTCTTCGTCTTCAAAATGCTCAAAAATTGACTCTGCTGAGCGTGACCAACACAGAATCCCTCCTATTCGCCCACCGGAGAAAAGACAGCGTGTTCCTTCTGCGTATAACAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAAAAATCCTGACATTAGCCATAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCACATCCACTTTGGACTGAAGCTGGATGGAAATAAGCAATCAAATTAA 510 43.92 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSSQQGHKQQQVSSTGDSSKERGSSSSKCSKIDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQSN 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1603611 1610212 + MC02g0163 Mch2g0212 681134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0212 169 FunFam axial regulator YABBY 5-like 98 156 - -
Mch2g0212 169 CDD HMG-box_SF 114 150 - -
Mch2g0212 169 Gene3D High mobility group box domain 95 155 IPR036910 -
Mch2g0212 169 PANTHER PROTEIN YABBY 6-RELATED 6 167 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
Mch2g0212 169 Pfam YABBY protein 7 160 IPR006780 GO:0007275(InterPro)
Mch2g0212 169 MobiDBLite consensus disorder prediction 85 109 - -
Mch2g0212 169 SUPERFAMILY HMG-box 105 153 IPR036910 -
Mch2g0212 169 MobiDBLite consensus disorder prediction 57 117 - -
Mch2g0212 169 MobiDBLite consensus disorder prediction 57 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0212 Mch-Chr2:1603611 Mch6g0711 Mch-Chr6:4887665 1.39E-55 dispersed
Mch2g0212 Mch-Chr2:1603611 Mch8g3074 Mch-Chr8:33217996 6.68E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42848 PF04690 YABBY 7.30E-74 CL0114 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0212 K25796 - csv:101222154 287.345