Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0219 ATGCAAGACGAGGGCTTTGAAGTTGAAGTTCCCTCCTATTTTCTGTGCCCAATTTCTCTCCAACTAATGAGAGATCCAGTTACAATCTCCACAGGCATCACCTACGACCGATCCGCCATTGAAAAATGGCTATTTTCATGCAACAAACAAACTTGCCCCATCACCAAACAGCCATTGTCCACCTCCGATTTAACCCCAAATCACACCCTTCGCCGATTGATCCAAGCTTGGTGCACCCTCCACGCCTCTCATGGAGTCGAACGAATTCCAACTCCCAAGACTCCAATTGACAAAACCCACATCGCCAAAATCCTCAAACAGGCCCAAAATTTCTCCCCCGATTCACTCCATAAATGCCTCATTACCCTCAAAGCCACCGCCTTGGAGAGCCAAAGAAACCGCAACCTTGTGGCGGAATCCGATGGAGTGTTTGACTTTCTCGCCGCCGTCGTCACAGGTGGTGCCAATCACAACATTGATTCCGTCGAATTAGCCGTTGAGATTCTTTTCCACCTCAAATCCTCCGAAACCCATCTCAAGAATCTAGTGAACGGCGACGGTAGCTTCATGAATTCTCTACTCCACGTCCTCCAACGTGGGAACTACCAATCTAGAGCCTACGCTGTAATGTTGCTCCAATCAACCTCCCAACTTGCCCATCCAATTCATTTGATGAGTATCGATAGAGAGGTTTTCAAGGAGATTGTGCGTGTAATACAAGATCAGATATCTCGCCAAGCCACTAAATCCGCGTTGAAGCTTTTGGCGGAGGTGTGTCCGTGGGGGCGGAACCGAATCAAGGCCGTGGACTGTGACGCGGTTGGGGTGCTAGTGGAGTTGCTTCTTAACTCGACTGAGCGGCGGTGGTCAGAGCTAGGGTTGGTGGTTTTGGATCAGCTATGCGGGCGCGCGGAGGGGAGGGAGAAGTTGTTGGGGCACGGGGCTGGGGTGGCGGTCGTGTCGAAGAAGATACTTAGGGTTTCGACATTGGCAAGCAACAGAGCGGTGAGGATATTGTCGTCGATATGTCGGTTTTCGGGAACGGGGAAGGTGGTTCAAGAGATGTTGGAGGTTGGGGTGGTGGCGAAGCTGTGTTTGGTGTTGCAAATGGATTGTAGTTTGAAGACAAGGGAGAAGGCGAGAGATATACTTAAACTGCATTTTAGGGTTTGGAGTAACTCTTCTTGTATTCCTCCTCATTTGTTGTCTGCTTATCCA 1218 49.92 MQDEGFEVEVPSYFLCPISLQLMRDPVTISTGITYDRSAIEKWLFSCNKQTCPITKQPLSTSDLTPNHTLRRLIQAWCTLHASHGVERIPTPKTPIDKTHIAKILKQAQNFSPDSLHKCLITLKATALESQRNRNLVAESDGVFDFLAAVVTGGANHNIDSVELAVEILFHLKSSETHLKNLVNGDGSFMNSLLHVLQRGNYQSRAYAVMLLQSTSQLAHPIHLMSIDREVFKEIVRVIQDQISRQATKSALKLLAEVCPWGRNRIKAVDCDAVGVLVELLLNSTERRWSELGLVVLDQLCGRAEGREKLLGHGAGVAVVSKKILRVSTLASNRAVRILSSICRFSGTGKVVQEMLEVGVVAKLCLVLQMDCSLKTREKARDILKLHFRVWSNSSCIPPHLLSAYP 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1679765 1680982 + MC02g0170 Mch2g0219 681141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0219 406 Gene3D - 92 396 IPR011989 -
Mch2g0219 406 CDD RING-Ubox_PUB 11 64 IPR045210 -
Mch2g0219 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Mch2g0219 406 FunFam RING-type E3 ubiquitin transferase 3 87 - -
Mch2g0219 406 PANTHER WDSAM1 PROTEIN 7 404 IPR045185 GO:0061630(InterPro)
Mch2g0219 406 SUPERFAMILY ARM repeat 101 380 IPR016024 -
Mch2g0219 406 SMART Ubox_2 13 77 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch2g0219 406 ProSiteProfiles U-box domain profile. 9 84 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch2g0219 406 SUPERFAMILY RING/U-box 4 83 - -
Mch2g0219 406 Pfam U-box domain 10 81 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0580 Mch-Chr1:9979146 Mch2g0219 Mch-Chr2:1679765 1.04E-132 dispersed
Mch2g0219 Mch-Chr2:1679765 Mch6g1299 Mch-Chr6:10736932 2.05E-103 dispersed
Mch11g0110 Mch-Chr11:729513 Mch2g0219 Mch-Chr2:1679765 1.43E-13 transposed
Mch1g1029 Mch-Chr1:13295886 Mch2g0219 Mch-Chr2:1679765 1.35E-21 transposed
Mch8g2291 Mch-Chr8:26030881 Mch2g0219 Mch-Chr2:1679765 8.27E-52 transposed
Mch2g0219 Mch-Chr2:1679765 Mch5g1539 Mch-Chr5:16414375 5.01E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0219 - - - 0.0