Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch2g0220 | ATGGCGACGTACTTCCACGGTGGTTCAGAAATCAGTGGCAATTCTGACGGAATTCACACCCTTTACCTGATGAACCCCAATTATGTACCCTACTCTGACACCCACTCTCAAACGCCTCCCAATATGCTCTTCCTCAACCCGGCTACTCTCCCCCACGCGCTCAACCCATCTAATCTTCCGCACGCGCCGCCCTCCAGCAACCACTTCGTCGGAGTTCCCCTCCCCACCAACGACGCGCCTCCCCGCCCTCCCTTCGCTTCTCAGTCTCACCACGACATCTCCGCCCTCCACGGCATGCCCGCTCAGCGCCTCCACTACAACCTCTGGGCTCCCGTGGACCAAACCCACAACGGAATCTCCGCGCAGCAGGGCTTGTCGCTGAGCCTCTCCTCGCAGCAGTCGCTTTACCGGACGCTGTCGGCGGAGCAGGAGATTCAAGGCGGCGGTGGGGCGGCTGCGGCGAGTGGGGATGAAATTCGGGTGTCGGGAAATTCGCCGACGTCGGTGTCGGTGGTGTCGACTGGAATAAGCGGCGTACAAAGCGTGATTTTGGGGTCAAAATATCTGAAAGCGGCACAGGAACTTCTTGATGAAGTGGTTAACGTTGGCAAAGGAACTACTAAAACCGACAAGGCGGCTGAAGCTACCAATAAAGACAAGATGAAGATGAAGAAAGAATCAACGGCTGCGATTGGAGAACTCTCCGCCGGCGCTGACACTGCTTCCAACCCTGCCGCCGAGCTCAGCACTGCCCAACGACAGGACCTTCAGATGAAGAAAGCTAAGCTTATCGGCATGCTTGATGAGGTGGAGCAGAAGTACAGAGAGTACGAGCAACAAATGCAGGGAGTGGTTCGGTCGTTCGAGCAGGCGGCAGGGCTGGGGTCGGCCAAGTCGTACGCCTCGCTCGCGCTACAGACAATCTCTAAGCAATTCCGGTGCCTCAAAGATGCAATATGTTCCCAAATAAGAGCCACCGGGAAGAGCCTTGGGGAGGAGGACTGGCTCGGGGCCAAGATCCAAGGGTCCAGATTGCGATACGTGGACCATCATCTACGGCAGCAGAGAGCCCTACAGCAGTTGGGAATGATTCAGCATAATACTTGGAGGCCGCAGAGGGGATTGCCTGAACGTGCCGTTTCTGTTCTTCGTGCTTGGCTTTTTGAGCATTTCCTTCACCCATATCCCAAGGATTCAGACAAGATTATTCTCGCCAAGCAAACGGGACTCACAAGGAGCCAAGTTTCGAACTGGTTTATAAATGCGAGAGTTCGCCTATGGAAGCCAATGGTTGAGGAAATGTACTTGGAGGAAATCAAAGATCAAGAACAAAATGGAGAATCCCAAGACATGAACAGAAACAACAAGAACGAACACAACAAGATGCAACATGGAGGAGGAGGAGGAGATCATCAGAATCATAACAATGCAGAAGCAGCAAACTTTAAATTGATGAACGACCCACAATCCAAGACAGAAAATTTCATCAACAATCATTCTCTCACGGATCATCACATGTCCAATAACAACTCATCATCATCCTCAATGTTGGGATCATTCAGCCTGATCCGACCATCCTCCTCCGACATTCTGGGAAGTCCCAAGAAGCCAAGAACAAACAACAACAACAACCTTGATTTTGAATCAGCTCCCTCCACAAAAACCATGCTTTTAAGAGACCAAATTAACGACACCAAACACCTTCTCCACACTAGCTCCGGCCATGCCCCTGGATTTGGCGCCTACCCAATTGCCGAAATTGGATCAAGGTTCAATCCTGAGATGTTGACCCCAAGATTTCATGGCAATGGCGTCTCTCTCACTCTTGGCCTCCCACATTCACATTCCGATAACCTCTCTCTTTCAGCAACCCAACACAACTACCTCTCCAACCCAAACCTAAGGCCGGTAGAATTGGGAAATAGTGTCGGAGCCGACTTCACCGACATCCCGCCGCCTCCACCCTCCACCGCCTACCACGGCGTCGAAATGCAAACCACCAAAAGGTTCGCCGCCCAATTATTGCCTGATTTTGTTGCCTGA | 2043 | 52.23 | MATYFHGGSEISGNSDGIHTLYLMNPNYVPYSDTHSQTPPNMLFLNPATLPHALNPSNLPHAPPSSNHFVGVPLPTNDAPPRPPFASQSHHDISALHGMPAQRLHYNLWAPVDQTHNGISAQQGLSLSLSSQQSLYRTLSAEQEIQGGGGAAAASGDEIRVSGNSPTSVSVVSTGISGVQSVILGSKYLKAAQELLDEVVNVGKGTTKTDKAAEATNKDKMKMKKESTAAIGELSAGADTASNPAAELSTAQRQDLQMKKAKLIGMLDEVEQKYREYEQQMQGVVRSFEQAAGLGSAKSYASLALQTISKQFRCLKDAICSQIRATGKSLGEEDWLGAKIQGSRLRYVDHHLRQQRALQQLGMIQHNTWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKIILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKDQEQNGESQDMNRNNKNEHNKMQHGGGGGDHQNHNNAEAANFKLMNDPQSKTENFINNHSLTDHHMSNNNSSSSSMLGSFSLIRPSSSDILGSPKKPRTNNNNNLDFESAPSTKTMLLRDQINDTKHLLHTSSGHAPGFGAYPIAEIGSRFNPEMLTPRFHGNGVSLTLGLPHSHSDNLSLSATQHNYLSNPNLRPVELGNSVGADFTDIPPPPPSTAYHGVEMQTTKRFAAQLLPDFVA | 680 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1684991 | 1689424 | - | MC02g0171 | Mch2g0220 | 681142 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch2g0220 | 680 | CDD | homeodomain | 369 | 430 | IPR001356 | GO:0003677(InterPro) | |
Mch2g0220 | 680 | FunFam | BEL1-like homeodomain protein 9 | 372 | 434 | - | - | |
Mch2g0220 | 680 | Pfam | Homeobox KN domain | 386 | 425 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Mch2g0220 | 680 | Gene3D | - | 364 | 443 | - | - | |
Mch2g0220 | 680 | ProSiteProfiles | 'Homeobox' domain profile. | 366 | 429 | IPR001356 | GO:0003677(InterPro) | |
Mch2g0220 | 680 | Coils | Coil | 253 | 287 | - | - | |
Mch2g0220 | 680 | MobiDBLite | consensus disorder prediction | 441 | 465 | - | - | |
Mch2g0220 | 680 | MobiDBLite | consensus disorder prediction | 441 | 475 | - | - | |
Mch2g0220 | 680 | SMART | prehox3 | 177 | 321 | IPR006563 | - | |
Mch2g0220 | 680 | MobiDBLite | consensus disorder prediction | 500 | 519 | - | - | |
Mch2g0220 | 680 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 129 | 470 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Mch2g0220 | 680 | MobiDBLite | consensus disorder prediction | 528 | 549 | - | - | |
Mch2g0220 | 680 | SMART | HOX_1 | 369 | 433 | IPR001356 | GO:0003677(InterPro) | |
Mch2g0220 | 680 | Pfam | Associated with HOX | 182 | 319 | IPR006563 | - | |
Mch2g0220 | 680 | SUPERFAMILY | Homeodomain-like | 370 | 435 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0220 | Mch-Chr2:1684991 | Mch2g1082 | Mch-Chr2:7309966 | 3.56E-89 | dispersed | |
Mch2g1383 | Mch-Chr2:9999709 | Mch2g0220 | Mch-Chr2:1684991 | 1.87E-67 | transposed | |
Mch9g0411 | Mch-Chr9:3053525 | Mch2g0220 | Mch-Chr2:1684991 | 2.58E-73 | transposed | |
Mch2g0220 | Mch-Chr2:1684991 | Mch5g1540 | Mch-Chr5:16429301 | 3.72E-175 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42849 | PF07526 | POX | 7.10E-47 | No_clan | Mch | TF |
Pathway information
