Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0220 ATGGCGACGTACTTCCACGGTGGTTCAGAAATCAGTGGCAATTCTGACGGAATTCACACCCTTTACCTGATGAACCCCAATTATGTACCCTACTCTGACACCCACTCTCAAACGCCTCCCAATATGCTCTTCCTCAACCCGGCTACTCTCCCCCACGCGCTCAACCCATCTAATCTTCCGCACGCGCCGCCCTCCAGCAACCACTTCGTCGGAGTTCCCCTCCCCACCAACGACGCGCCTCCCCGCCCTCCCTTCGCTTCTCAGTCTCACCACGACATCTCCGCCCTCCACGGCATGCCCGCTCAGCGCCTCCACTACAACCTCTGGGCTCCCGTGGACCAAACCCACAACGGAATCTCCGCGCAGCAGGGCTTGTCGCTGAGCCTCTCCTCGCAGCAGTCGCTTTACCGGACGCTGTCGGCGGAGCAGGAGATTCAAGGCGGCGGTGGGGCGGCTGCGGCGAGTGGGGATGAAATTCGGGTGTCGGGAAATTCGCCGACGTCGGTGTCGGTGGTGTCGACTGGAATAAGCGGCGTACAAAGCGTGATTTTGGGGTCAAAATATCTGAAAGCGGCACAGGAACTTCTTGATGAAGTGGTTAACGTTGGCAAAGGAACTACTAAAACCGACAAGGCGGCTGAAGCTACCAATAAAGACAAGATGAAGATGAAGAAAGAATCAACGGCTGCGATTGGAGAACTCTCCGCCGGCGCTGACACTGCTTCCAACCCTGCCGCCGAGCTCAGCACTGCCCAACGACAGGACCTTCAGATGAAGAAAGCTAAGCTTATCGGCATGCTTGATGAGGTGGAGCAGAAGTACAGAGAGTACGAGCAACAAATGCAGGGAGTGGTTCGGTCGTTCGAGCAGGCGGCAGGGCTGGGGTCGGCCAAGTCGTACGCCTCGCTCGCGCTACAGACAATCTCTAAGCAATTCCGGTGCCTCAAAGATGCAATATGTTCCCAAATAAGAGCCACCGGGAAGAGCCTTGGGGAGGAGGACTGGCTCGGGGCCAAGATCCAAGGGTCCAGATTGCGATACGTGGACCATCATCTACGGCAGCAGAGAGCCCTACAGCAGTTGGGAATGATTCAGCATAATACTTGGAGGCCGCAGAGGGGATTGCCTGAACGTGCCGTTTCTGTTCTTCGTGCTTGGCTTTTTGAGCATTTCCTTCACCCATATCCCAAGGATTCAGACAAGATTATTCTCGCCAAGCAAACGGGACTCACAAGGAGCCAAGTTTCGAACTGGTTTATAAATGCGAGAGTTCGCCTATGGAAGCCAATGGTTGAGGAAATGTACTTGGAGGAAATCAAAGATCAAGAACAAAATGGAGAATCCCAAGACATGAACAGAAACAACAAGAACGAACACAACAAGATGCAACATGGAGGAGGAGGAGGAGATCATCAGAATCATAACAATGCAGAAGCAGCAAACTTTAAATTGATGAACGACCCACAATCCAAGACAGAAAATTTCATCAACAATCATTCTCTCACGGATCATCACATGTCCAATAACAACTCATCATCATCCTCAATGTTGGGATCATTCAGCCTGATCCGACCATCCTCCTCCGACATTCTGGGAAGTCCCAAGAAGCCAAGAACAAACAACAACAACAACCTTGATTTTGAATCAGCTCCCTCCACAAAAACCATGCTTTTAAGAGACCAAATTAACGACACCAAACACCTTCTCCACACTAGCTCCGGCCATGCCCCTGGATTTGGCGCCTACCCAATTGCCGAAATTGGATCAAGGTTCAATCCTGAGATGTTGACCCCAAGATTTCATGGCAATGGCGTCTCTCTCACTCTTGGCCTCCCACATTCACATTCCGATAACCTCTCTCTTTCAGCAACCCAACACAACTACCTCTCCAACCCAAACCTAAGGCCGGTAGAATTGGGAAATAGTGTCGGAGCCGACTTCACCGACATCCCGCCGCCTCCACCCTCCACCGCCTACCACGGCGTCGAAATGCAAACCACCAAAAGGTTCGCCGCCCAATTATTGCCTGATTTTGTTGCCTGA 2043 52.23 MATYFHGGSEISGNSDGIHTLYLMNPNYVPYSDTHSQTPPNMLFLNPATLPHALNPSNLPHAPPSSNHFVGVPLPTNDAPPRPPFASQSHHDISALHGMPAQRLHYNLWAPVDQTHNGISAQQGLSLSLSSQQSLYRTLSAEQEIQGGGGAAAASGDEIRVSGNSPTSVSVVSTGISGVQSVILGSKYLKAAQELLDEVVNVGKGTTKTDKAAEATNKDKMKMKKESTAAIGELSAGADTASNPAAELSTAQRQDLQMKKAKLIGMLDEVEQKYREYEQQMQGVVRSFEQAAGLGSAKSYASLALQTISKQFRCLKDAICSQIRATGKSLGEEDWLGAKIQGSRLRYVDHHLRQQRALQQLGMIQHNTWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKIILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKDQEQNGESQDMNRNNKNEHNKMQHGGGGGDHQNHNNAEAANFKLMNDPQSKTENFINNHSLTDHHMSNNNSSSSSMLGSFSLIRPSSSDILGSPKKPRTNNNNNLDFESAPSTKTMLLRDQINDTKHLLHTSSGHAPGFGAYPIAEIGSRFNPEMLTPRFHGNGVSLTLGLPHSHSDNLSLSATQHNYLSNPNLRPVELGNSVGADFTDIPPPPPSTAYHGVEMQTTKRFAAQLLPDFVA 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1684991 1689424 - MC02g0171 Mch2g0220 681142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0220 680 CDD homeodomain 369 430 IPR001356 GO:0003677(InterPro)
Mch2g0220 680 FunFam BEL1-like homeodomain protein 9 372 434 - -
Mch2g0220 680 Pfam Homeobox KN domain 386 425 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch2g0220 680 Gene3D - 364 443 - -
Mch2g0220 680 ProSiteProfiles 'Homeobox' domain profile. 366 429 IPR001356 GO:0003677(InterPro)
Mch2g0220 680 Coils Coil 253 287 - -
Mch2g0220 680 MobiDBLite consensus disorder prediction 441 465 - -
Mch2g0220 680 MobiDBLite consensus disorder prediction 441 475 - -
Mch2g0220 680 SMART prehox3 177 321 IPR006563 -
Mch2g0220 680 MobiDBLite consensus disorder prediction 500 519 - -
Mch2g0220 680 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 129 470 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch2g0220 680 MobiDBLite consensus disorder prediction 528 549 - -
Mch2g0220 680 SMART HOX_1 369 433 IPR001356 GO:0003677(InterPro)
Mch2g0220 680 Pfam Associated with HOX 182 319 IPR006563 -
Mch2g0220 680 SUPERFAMILY Homeodomain-like 370 435 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0220 Mch-Chr2:1684991 Mch2g1082 Mch-Chr2:7309966 3.56E-89 dispersed
Mch2g1383 Mch-Chr2:9999709 Mch2g0220 Mch-Chr2:1684991 1.87E-67 transposed
Mch9g0411 Mch-Chr9:3053525 Mch2g0220 Mch-Chr2:1684991 2.58E-73 transposed
Mch2g0220 Mch-Chr2:1684991 Mch5g1540 Mch-Chr5:16429301 3.72E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42849 PF07526 POX 7.10E-47 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0220 - - - 0.0