Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0227 ATGTCGGGTTCTCGAGCTCCCAACTCCTCTGGACTCCCCTCTGACCAGATCATGCACTCTCTCAAGCGCCACCTCCCCTTCTCTTCTATGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTCGCCTCCGAGCCTCGACTCTCCGATCACGAACCGGACGCCATCGTAGTCAAATCTCCGCAATTAAAGCGGAAGAGTGAGGTAGCAGATTATGAAGCCGAGTCCACTGATAGAGCAGCCGGTCCTAGATTTACTGAGGTAGTTAGTAGTCCCCATCAAACACCTGTATCTGTGAAAGGTGGAAAGGGGAACAAATCAAGGCTAACCAAATGCAGTAGATCAGGGCCACAGACTCCGATGTCAAATGTTGGTTCACCTTCTGCAAACAATCTTACACCAGCTGGCCCATGCCGTTATGATAGTTCTCTTGGTCTCTTAACAAAAAAGTTTATTAATCTGATCAAACAAGCAGAAGATGGTATTCTTGATCTAAATAAAGCAGCCGACACATTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTCGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGGCCAGGGGACGTTGATGACAATTATGCTGGTCTACAGGCAGAAGTAGAGAACCTTTCCATGGAGGAGCGTGGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGATAACAACCAAAGGCAGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTGCCTTGTTTCCAGAATGAAACTCTCATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTCCCAGATCCCGATGAGGCCGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTCAGTCAGTTTGAAGAGAAGTTTGAGGAGATAAATGGCGTTGAAGTGCCCCCAAGCTTGCCGTCAAGTTCAGGGTTTAATGAAACACCCGCAACAACGATGATAACAGATGATAGCAGGGGGAAGGAAATTGAAACGCGAGAGCAAGATGTACACAGAATGTGCTGCGATCTAAATGCTTCCCAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCGGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGTATCACAGACATTTGGAGATCTGAACCTGGCGTTGAGTGGAATGAACTGGGTACATTTCATGAAGATTACAGCATTGCCAATGTCAGCACACCCCAAACCCAGAATCCCCCGAATAACACAACTGATATGCCTTCTATTAATCCTACTAGTAGCTGA 1389 45.79 MSGSRAPNSSGLPSDQIMHSLKRHLPFSSMKPPFASPGDYHRFASEPRLSDHEPDAIVVKSPQLKRKSEVADYEAESTDRAAGPRFTEVVSSPHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPSANNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGDVDDNYAGLQAEVENLSMEERGLDEQIREMQERLRDLSEDDNNQRQWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVPPSLPSSSGFNETPATTMITDDSRGKEIETREQDVHRMCCDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDIWRSEPGVEWNELGTFHEDYSIANVSTPQTQNPPNNTTDMPSINPTSS 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1725575 1737417 + MC02g0177 Mch2g0227 681149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0227 462 PANTHER TRANSCRIPTION FACTOR E2F 31 418 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Mch2g0227 462 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch2g0227 462 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch2g0227 462 SUPERFAMILY E2F-DP heterodimerization region 217 323 IPR037241 -
Mch2g0227 462 MobiDBLite consensus disorder prediction 109 133 - -
Mch2g0227 462 MobiDBLite consensus disorder prediction 90 133 - -
Mch2g0227 462 MobiDBLite consensus disorder prediction 1 16 - -
Mch2g0227 462 MobiDBLite consensus disorder prediction 337 354 - -
Mch2g0227 462 MobiDBLite consensus disorder prediction 439 462 - -
Mch2g0227 462 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
Mch2g0227 462 MobiDBLite consensus disorder prediction 335 354 - -
Mch2g0227 462 CDD E2F_DD 216 323 IPR032198 GO:0046983(InterPro)
Mch2g0227 462 Gene3D - 134 207 IPR036388 -
Mch2g0227 462 Gene3D - 212 323 - -
Mch2g0227 462 MobiDBLite consensus disorder prediction 44 60 - -
Mch2g0227 462 FunFam E2F transcription factor 1 134 207 - -
Mch2g0227 462 MobiDBLite consensus disorder prediction 1 60 - -
Mch2g0227 462 Coils Coil 218 252 - -
Mch2g0227 462 Pfam E2F transcription factor CC-MB domain 221 322 IPR032198 GO:0046983(InterPro)
Mch2g0227 462 Coils Coil 156 176 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0227 K06620 - - csv:101219318 825.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0227 Mch-Chr2:1725575 Mch3g1476 Mch-Chr3:16986464 8.74E-10 dispersed
Mch8g0842 Mch-Chr8:6009724 Mch2g0227 Mch-Chr2:1725575 4.46E-67 transposed
Mch1g0971 Mch-Chr1:12866209 Mch2g0227 Mch-Chr2:1725575 3.58E-145 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch3g1476 . 3 375 E2F-DP Transcription Factor Family AT3G48160 55.1 8.3e-105 377.5
Mch10g0326 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 5.9e-60 228.0
Mch2g0227 . 21 461 E2F-DP Transcription Factor Family AT2G36010 55.2 1.3e-120 430.3
Mch1g0971 . 387 764 E2F-DP Transcription Factor Family AT2G36010 57.6 2.4e-106 382.9
Mch2g0227 . 24 463 E2F-DP Transcription Factor Family AT5G22220 56.2 8.7e-114 407.5
Mch1g0971 . 386 780 E2F-DP Transcription Factor Family AT5G22220 50.9 5.7e-89 325.1
Mch8g0842 . 153 406 E2F-DP Transcription Factor Family AT1G47870 54.7 8.8e-67 251.1
Mch2g0227 . 139 416 E2F-DP Transcription Factor Family AT1G47870 51.1 1.1e-61 234.2
Mch10g0326 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 5.9e-60 228.0
Mch2g0227 . 24 463 E2F-DP Transcription Factor Family AT5G22220 56.2 8.7e-114 407.5
Mch1g0971 . 386 780 E2F-DP Transcription Factor Family AT5G22220 50.9 5.7e-89 325.1
Mch2g0227 . 21 461 E2F-DP Transcription Factor Family AT2G36010 55.2 1.3e-120 430.3
Mch1g0971 . 387 764 E2F-DP Transcription Factor Family AT2G36010 57.6 2.4e-106 382.9
Mch8g0842 . 153 406 E2F-DP Transcription Factor Family AT1G47870 54.7 8.8e-67 251.1
Mch2g0227 . 139 416 E2F-DP Transcription Factor Family AT1G47870 51.1 1.1e-61 234.2
Mch3g1476 . 3 375 E2F-DP Transcription Factor Family AT3G48160 55.1 8.3e-105 377.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42850 PF16421 E2F_CC-MB 5.10E-35 No_clan Mch TF