Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0227 ATGTCGGGTTCTCGAGCTCCCAACTCCTCTGGACTCCCCTCTGACCAGATCATGCACTCTCTCAAGCGCCACCTCCCCTTCTCTTCTATGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTCGCCTCCGAGCCTCGACTCTCCGATCACGAACCGGACGCCATCGTAGTCAAATCTCCGCAATTAAAGCGGAAGAGTGAGGTAGCAGATTATGAAGCCGAGTCCACTGATAGAGCAGCCGGTCCTAGATTTACTGAGGTAGTTAGTAGTCCCCATCAAACACCTGTATCTGTGAAAGGTGGAAAGGGGAACAAATCAAGGCTAACCAAATGCAGTAGATCAGGGCCACAGACTCCGATGTCAAATGTTGGTTCACCTTCTGCAAACAATCTTACACCAGCTGGCCCATGCCGTTATGATAGTTCTCTTGGTCTCTTAACAAAAAAGTTTATTAATCTGATCAAACAAGCAGAAGATGGTATTCTTGATCTAAATAAAGCAGCCGACACATTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTCGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGGCCAGGGGACGTTGATGACAATTATGCTGGTCTACAGGCAGAAGTAGAGAACCTTTCCATGGAGGAGCGTGGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGATAACAACCAAAGGCAGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTGCCTTGTTTCCAGAATGAAACTCTCATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTCCCAGATCCCGATGAGGCCGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTCAGTCAGTTTGAAGAGAAGTTTGAGGAGATAAATGGCGTTGAAGTGCCCCCAAGCTTGCCGTCAAGTTCAGGGTTTAATGAAACACCCGCAACAACGATGATAACAGATGATAGCAGGGGGAAGGAAATTGAAACGCGAGAGCAAGATGTACACAGAATGTGCTGCGATCTAAATGCTTCCCAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCGGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGTATCACAGACATTTGGAGATCTGAACCTGGCGTTGAGTGGAATGAACTGGGTACATTTCATGAAGATTACAGCATTGCCAATGTCAGCACACCCCAAACCCAGAATCCCCCGAATAACACAACTGATATGCCTTCTATTAATCCTACTAGTAGCTGA 1389 45.79 MSGSRAPNSSGLPSDQIMHSLKRHLPFSSMKPPFASPGDYHRFASEPRLSDHEPDAIVVKSPQLKRKSEVADYEAESTDRAAGPRFTEVVSSPHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPSANNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGDVDDNYAGLQAEVENLSMEERGLDEQIREMQERLRDLSEDDNNQRQWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVPPSLPSSSGFNETPATTMITDDSRGKEIETREQDVHRMCCDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDIWRSEPGVEWNELGTFHEDYSIANVSTPQTQNPPNNTTDMPSINPTSS 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1725575 1737417 + MC02g0177 Mch2g0227 681149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0227 462 PANTHER TRANSCRIPTION FACTOR E2F 31 418 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Mch2g0227 462 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch2g0227 462 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch2g0227 462 SUPERFAMILY E2F-DP heterodimerization region 217 323 IPR037241 -
Mch2g0227 462 MobiDBLite consensus disorder prediction 109 133 - -
Mch2g0227 462 MobiDBLite consensus disorder prediction 90 133 - -
Mch2g0227 462 MobiDBLite consensus disorder prediction 1 16 - -
Mch2g0227 462 MobiDBLite consensus disorder prediction 337 354 - -
Mch2g0227 462 MobiDBLite consensus disorder prediction 439 462 - -
Mch2g0227 462 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
Mch2g0227 462 MobiDBLite consensus disorder prediction 335 354 - -
Mch2g0227 462 CDD E2F_DD 216 323 IPR032198 GO:0046983(InterPro)
Mch2g0227 462 Gene3D - 134 207 IPR036388 -
Mch2g0227 462 Gene3D - 212 323 - -
Mch2g0227 462 MobiDBLite consensus disorder prediction 44 60 - -
Mch2g0227 462 FunFam E2F transcription factor 1 134 207 - -
Mch2g0227 462 MobiDBLite consensus disorder prediction 1 60 - -
Mch2g0227 462 Coils Coil 218 252 - -
Mch2g0227 462 Pfam E2F transcription factor CC-MB domain 221 322 IPR032198 GO:0046983(InterPro)
Mch2g0227 462 Coils Coil 156 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0227 Mch-Chr2:1725575 Mch3g1476 Mch-Chr3:16986464 8.74E-10 dispersed
Mch8g0842 Mch-Chr8:6009724 Mch2g0227 Mch-Chr2:1725575 4.46E-67 transposed
Mch1g0971 Mch-Chr1:12866209 Mch2g0227 Mch-Chr2:1725575 3.58E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42850 PF16421 E2F_CC-MB 5.10E-35 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0227 K06620 - csv:101219318 825.083