Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0253 ATGGCGAGCCACAGAGTTGAAGAAACTGAACCTTCCAGCCACCATCTTCCATATAATCTTTACGGAATCCACAACAACAATCCTCCCTCCACTTTGATCAACCAAGATGGCCCAGCTTTTGATTTTGGAGAATTGGAACAAGCAATTGTGGTACAAGGACAAGCCTTTTCCTCAGGCAGGCCTGCAATGACTCTGGAAATGTTCCCTTCTTGGCCAATCAAATTCCAACAAACTCTCACAGGGATTAGTTTGAGGTGGGGAGAAGGAGGAGGAGAAGAGAGGAGTGATGAGTCAGGATCTGGTGTGGACGCTCATACAATTCCGATGAGTAAAAAGGCATCATCTTCTTCTTCTTCTTCTTCATCAGGTCGTCATCATGATCAGAGCTCTTTTCAGAAGAATCTGCAGCTTCAAACTCAGATCACGCAGCTCACTGATGGACTATCACCACACCATCATCACTCCCCTCAACAAAAGAGAAAAGGATGTGGTTCGACTTCAACATCACACAAACAACTTGACGCTAAGACATTGAGACGTTTGGCCCAAAACAGAGAAGCTGCGAGGAAGAGTCGACTCAGAAAAAAGGCGTACGTACAGCAACTTGAAAGTAGTAGAATTAAGCTTACGCAGCTTGAACAAGACCTTCAACGGGCACGATCTCAGGGTTTATTTCTGGGTGCTGCCGGTGCCAATCTCACCTCTGGAGCTGCAATGTTTGACATGGAATATGCGAGATGGTTGGAAGACGACCACCGGAACACGGCGGAGCTGCGGGCGGCGTTGGACACGCATCTACCGGACGGCGATCTCAGAGTGATGGTAGACGCGTGCGTTTGCCATTACGACGAGATTTTCCGGCTGAAAGGAGAGGCTGCCAAGTCCGACGTCTTCCACCTCATCACCGGAATGTGGATGACTCCGGCTGAGCGCTGCTTTGTCTGGATCGGCGGCTACCGGCCGTCGGATCTTATGAAGATGTTATTATCACAATTGGAGCCAATAACAGAACAACAATTGATGGAAATATATAAGCTGCAGCATTCGTCACAGCAGGCAGAAGATGCATTATCCCAAGGTCTGGATCAACTCCACCACTCTCTCATGGAGACCGTCGCCGGAGCTCCAGTCATCGACGGCATAAACCAGATGATATTGGCCATCCACAAGCTTTCCAATCTCCAAGGTTTCCTTCACCAGGCCGATATTCTGAGGCAACAAATACTTCATCAACTTCAAAAGATACTCACCATCCGACAAGCAGCGAGATGTTTTTGGGTCATTGGTGAATATAACAATAGATTACGAGGCTTGAGCTCTCTATGGTCCTCTCGTCCAAAGGAGCAAGATCAATAA 1356 47.94 MASHRVEETEPSSHHLPYNLYGIHNNNPPSTLINQDGPAFDFGELEQAIVVQGQAFSSGRPAMTLEMFPSWPIKFQQTLTGISLRWGEGGGEERSDESGSGVDAHTIPMSKKASSSSSSSSSGRHHDQSSFQKNLQLQTQITQLTDGLSPHHHHSPQQKRKGCGSTSTSHKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDLQRARSQGLFLGAAGANLTSGAAMFDMEYARWLEDDHRNTAELRAALDTHLPDGDLRVMVDACVCHYDEIFRLKGEAAKSDVFHLITGMWMTPAERCFVWIGGYRPSDLMKMLLSQLEPITEQQLMEIYKLQHSSQQAEDALSQGLDQLHHSLMETVAGAPVIDGINQMILAIHKLSNLQGFLHQADILRQQILHQLQKILTIRQAARCFWVIGEYNNRLRGLSSLWSSRPKEQDQ 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1875375 1881773 - MC02g0201 Mch2g0253 681175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0253 451 MobiDBLite consensus disorder prediction 85 132 - -
Mch2g0253 451 MobiDBLite consensus disorder prediction 146 178 - -
Mch2g0253 451 PANTHER TRANSCRIPTION FACTOR TGA9 105 449 - -
Mch2g0253 451 Pfam bZIP transcription factor 175 217 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0253 451 ProSiteProfiles DOG1 domain profile. 237 445 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Mch2g0253 451 SMART brlzneu 172 246 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0253 451 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 174 218 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0253 451 Pfam Seed dormancy control 256 329 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Mch2g0253 451 MobiDBLite consensus disorder prediction 109 132 - -
Mch2g0253 451 Coils Coil 195 222 - -
Mch2g0253 451 CDD bZIP_HBP1b-like 176 227 - -
Mch2g0253 451 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 179 194 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0253 451 Gene3D - 175 224 - -
Mch2g0253 451 SUPERFAMILY Leucine zipper domain 176 218 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0253 451 FunFam BZIP family transcription factor 175 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0253 Mch-Chr2:1875375 Mch8g0171 Mch-Chr8:1092042 1.52E-109 dispersed
Mch4g2646 Mch-Chr4:26572233 Mch2g0253 Mch-Chr2:1875375 1.83E-81 transposed
Mch5g1951 Mch-Chr5:19421799 Mch2g0253 Mch-Chr2:1875375 4.47E-11 transposed
Mch8g0304 Mch-Chr8:2129519 Mch2g0253 Mch-Chr2:1875375 3.00E-09 transposed
Mch2g0253 Mch-Chr2:1875375 Mch3g0661 Mch-Chr3:11100891 2.18E-167 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42854 PF14144 DOG1 5.50E-29 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0253 K14431 - csv:101223216 530.02