Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0282 ATGACCGTCATCGACATCATCTTCCGTGTCGACGCCATCTGCCAGAAATACGACAAGTATGATGTCGAGAAGCAGCGCGAGCTCAATGCCTATGGAGACGATGTCTTTGCTCGCCTCTTCGCCGCCGTTGAGCTCGAAATCGAAGCCGCTCTCAAGAAATCTGAGACCGCCGCGACTGAGAAGAATAGGGCTTCTGCAGTTGCGATGAACGCCGAGGTACGCCGGAAGAAGGCCCGATTGATGGACGAAGTCCCTAAGCTCCATAAATTGGCCCGCAAGAAGGTTAAAGGGCTTCCGAAAGAAGAGCTTGCGGTGAGAGGCGACCTTGTTCTTGCGCTTGAAGAGAGGATTAAGGCGATACCGGATGGGGCTACCTCAGCAGGCAAACAATCTGGAGGATGGGCATCCTCCTCATCATCTAAAAACATCAAGTTTGATTCATCATCAGATGGAAACTTTGAGAGCGAGTATTTCCAGCAAAGTAAAGAATCGAGTCAGTTTCGGCAGGAGTATGAAATGCGGAAGATGAAACAGGCATGTCTCGATATCATATCTGAAGGATTGGATATGCTGAAAGATCTAGCTCATGAAATGAATGAGGAATTAGACAGGCAAGTTCCATTAATCGACGAGATAGACGCAAAGGTAGACAAGGTGACTAATGAGATTAAAAATACTAATGTTAGACTCAAGGAAACACTCTATGAGGTGAGATCCAGCCAAAACTTTTGCATTGATATTATTCTTCTATGTGTTATTCTTGGAATCGCTTCTTACTTGTAC 783 46.1 MTVIDIIFRVDAICQKYDKYDVEKQRELNAYGDDVFARLFAAVELEIEAALKKSETAATEKNRASAVAMNAEVRRKKARLMDEVPKLHKLARKKVKGLPKEELAVRGDLVLALEERIKAIPDGATSAGKQSGGWASSSSSKNIKFDSSSDGNFESEYFQQSKESSQFRQEYEMRKMKQACLDIISEGLDMLKDLAHEMNEELDRQVPLIDEIDAKVDKVTNEIKNTNVRLKETLYEVRSSQNFCIDIILLCVILGIASYLY 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2113563 2115203 + MC02g0225 Mch2g0282 681204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0282 261 Pfam SNARE domain 208 257 IPR000727 -
Mch2g0282 261 Coils Coil 209 229 - -
Mch2g0282 261 MobiDBLite consensus disorder prediction 124 149 - -
Mch2g0282 261 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 171 233 IPR000727 -
Mch2g0282 261 MobiDBLite consensus disorder prediction 129 149 - -
Mch2g0282 261 CDD SNARE_Qc 181 232 - -
Mch2g0282 261 PANTHER SYNTAXIN 48 251 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Mch2g0282 261 SUPERFAMILY SNARE fusion complex 178 231 - -
Mch2g0282 261 Gene3D - 170 232 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0282 Mch-Chr2:2113563 Mch5g1759 Mch-Chr5:18170087 4.42E-117 dispersed
Mch2g0282 Mch-Chr2:2113563 Mch2g0362 Mch-Chr2:2702939 7.31E-171 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0282 K08506 - csv:101211289 423.32