Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0308 ATGTTTGACATGGAGCCAATTGGGAAGCCATTAATGATGAACATCAACGACTTCGAGCTCCAAGATTTCATTCACGGCGACAACTTTGATCAATACGTGAATCTCATTCGTGGGGAGCCCGAAAATCCAACATTCAACTTTGATCTTGAATACATGCTAGATTCCAATATTGTCATGAATTCTGATCCCAATTCTCTGTTCGGTTCATTGGAGAGTTTCAACAGTATTATGAGAGAAGTTGAAGATGAAGACGAAGACGATACTTCTGTGGAGAATTCTTCCATCACAACAACAACAAAGAAGCCAAAAGTTGACAGATCAAGAACTTTGATTTCTGAAAGAAGGAGGAGGGGAAGAATGAAGGAAAAACTTTATGCATTACGCTCATTGGTTCCAAATATAACCAAGATGGATAAGGCTTCCATTGTTGGAGATGCAGTGTTGTATGTGAAAGAGCTTCAAATGCAGGCCAAGAAGCTCAAAGCTGAGATATCAGTTTTGGAATCCTCCATTAATGAGATACAAACACACCATCGACCAACTGATCAAAGCCACAGAAAGATTCAAACTTCACGCTCTGACCAGTTCCTCCCCAACAAGATAATTCAGGCAACTGATGTGTTTCAAGTGGAGGAAAGAGGGTTTTATTTGAGGATGGTGTGCAAGATGGGTGAAGGAGTAGCCATGTCCCTTTACAAGGTTCTTGAATCTCTTACCAGTTTCAATATCCAAAGCTCCAACTTGGCCTCTGCCTCTGACAGATTCATCCTCACTGCTACAATCAATGTGAGAGATTGTGAGGTGGACATGAACTTGCCAAATATGAAGCTTTGGCTTACTGGGGCACTTCTTAACCATGGATTTGAGTTCTAA 873 41.12 MFDMEPIGKPLMMNINDFELQDFIHGDNFDQYVNLIRGEPENPTFNFDLEYMLDSNIVMNSDPNSLFGSLESFNSIMREVEDEDEDDTSVENSSITTTTKKPKVDRSRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLYVKELQMQAKKLKAEISVLESSINEIQTHHRPTDQSHRKIQTSRSDQFLPNKIIQATDVFQVEERGFYLRMVCKMGEGVAMSLYKVLESLTSFNIQSSNLASASDRFILTATINVRDCEVDMNLPNMKLWLTGALLNHGFEF 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2321646 2323089 - MC02g0249 Mch2g0308 681230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0308 290 Coils Coil 150 177 - -
Mch2g0308 290 MobiDBLite consensus disorder prediction 80 108 - -
Mch2g0308 290 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 100 170 - -
Mch2g0308 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 106 181 IPR036638 GO:0046983(InterPro)
Mch2g0308 290 Gene3D - 95 184 IPR036638 GO:0046983(InterPro)
Mch2g0308 290 Pfam Helix-loop-helix DNA-binding domain 109 154 IPR011598 GO:0046983(InterPro)
Mch2g0308 290 SMART finulus 110 159 IPR011598 GO:0046983(InterPro)
Mch2g0308 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 153 IPR011598 GO:0046983(InterPro)
Mch2g0308 290 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 83 288 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0308 Mch-Chr2:2321646 Mch9g2245 Mch-Chr9:22852426 1.66E-17 dispersed
Mch2g0308 Mch-Chr2:2321646 Mch6g0493 Mch-Chr6:3265113 2.10E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42859 PF00010 HLH 2.30E-09 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0308 K26214 - csv:101213681 422.935