Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch2g0308 | ATGTTTGACATGGAGCCAATTGGGAAGCCATTAATGATGAACATCAACGACTTCGAGCTCCAAGATTTCATTCACGGCGACAACTTTGATCAATACGTGAATCTCATTCGTGGGGAGCCCGAAAATCCAACATTCAACTTTGATCTTGAATACATGCTAGATTCCAATATTGTCATGAATTCTGATCCCAATTCTCTGTTCGGTTCATTGGAGAGTTTCAACAGTATTATGAGAGAAGTTGAAGATGAAGACGAAGACGATACTTCTGTGGAGAATTCTTCCATCACAACAACAACAAAGAAGCCAAAAGTTGACAGATCAAGAACTTTGATTTCTGAAAGAAGGAGGAGGGGAAGAATGAAGGAAAAACTTTATGCATTACGCTCATTGGTTCCAAATATAACCAAGATGGATAAGGCTTCCATTGTTGGAGATGCAGTGTTGTATGTGAAAGAGCTTCAAATGCAGGCCAAGAAGCTCAAAGCTGAGATATCAGTTTTGGAATCCTCCATTAATGAGATACAAACACACCATCGACCAACTGATCAAAGCCACAGAAAGATTCAAACTTCACGCTCTGACCAGTTCCTCCCCAACAAGATAATTCAGGCAACTGATGTGTTTCAAGTGGAGGAAAGAGGGTTTTATTTGAGGATGGTGTGCAAGATGGGTGAAGGAGTAGCCATGTCCCTTTACAAGGTTCTTGAATCTCTTACCAGTTTCAATATCCAAAGCTCCAACTTGGCCTCTGCCTCTGACAGATTCATCCTCACTGCTACAATCAATGTGAGAGATTGTGAGGTGGACATGAACTTGCCAAATATGAAGCTTTGGCTTACTGGGGCACTTCTTAACCATGGATTTGAGTTCTAA | 873 | 41.12 | MFDMEPIGKPLMMNINDFELQDFIHGDNFDQYVNLIRGEPENPTFNFDLEYMLDSNIVMNSDPNSLFGSLESFNSIMREVEDEDEDDTSVENSSITTTTKKPKVDRSRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLYVKELQMQAKKLKAEISVLESSINEIQTHHRPTDQSHRKIQTSRSDQFLPNKIIQATDVFQVEERGFYLRMVCKMGEGVAMSLYKVLESLTSFNIQSSNLASASDRFILTATINVRDCEVDMNLPNMKLWLTGALLNHGFEF | 290 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2321646 | 2323089 | - | MC02g0249 | Mch2g0308 | 681230 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch2g0308 | 290 | Coils | Coil | 150 | 177 | - | - | |
Mch2g0308 | 290 | MobiDBLite | consensus disorder prediction | 80 | 108 | - | - | |
Mch2g0308 | 290 | FunFam | Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | 100 | 170 | - | - | |
Mch2g0308 | 290 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 106 | 181 | IPR036638 | GO:0046983(InterPro) | |
Mch2g0308 | 290 | Gene3D | - | 95 | 184 | IPR036638 | GO:0046983(InterPro) | |
Mch2g0308 | 290 | Pfam | Helix-loop-helix DNA-binding domain | 109 | 154 | IPR011598 | GO:0046983(InterPro) | |
Mch2g0308 | 290 | SMART | finulus | 110 | 159 | IPR011598 | GO:0046983(InterPro) | |
Mch2g0308 | 290 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 104 | 153 | IPR011598 | GO:0046983(InterPro) | |
Mch2g0308 | 290 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 83 | 288 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0308 | Mch-Chr2:2321646 | Mch9g2245 | Mch-Chr9:22852426 | 1.66E-17 | dispersed | |
Mch2g0308 | Mch-Chr2:2321646 | Mch6g0493 | Mch-Chr6:3265113 | 2.10E-16 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42859 | PF00010 | HLH | 2.30E-09 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch2g0308 | K26214 | - | csv:101213681 | 422.935 |