Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0315 ATGCTTTCACTGCGTTCATGTTACTATCTACGCCCCGTTACAATCGCATTGCCTCATCCCCAATTCAAGAAACTCATTTTCTTCAACAAAACTCATTCTTTCAAACCCATCCTCCCGAATTTTGTTTCCGCAATGTCTTCTCGTCCTTCGGCTTTCGATGCTCTCATGTCTGGTGCTCGGGCCGCTGCCAAGAAGAAGTCTGCAACTTCAACTTCTTCTCCCAAGAAGCGTAAAGCCCTAGATTCTTTAGACCCTTCTCCAAAACCTAGCTCCTCCCACACTTTGGAGTCAATGCTGCCTGTTGAATCGCAGTGCGGCAACTCAATTTTGGACAATCCTGGAGGTTCTCATCTGGGAACGGCCGAGAACGCGGTGGATTTGGGAGAAACCAAGTTGGGTCAAGATAATGGCGGCAGTGTTGGAACCAAGAATGGGCCGGCGGGGAGTAAAACGTGCGCGACAAGTGTTCAAGAAAGAACTGCGAAATTGAAGAGTTCTATTCCAGAATTGAAAAAGAAAGCCAAGGATTTCAACTCGAAAAATGTTGCGTGTTGGAAAGAGGGCGAACGGGTCCCCTGTTTGTTTCTGTGTCTGGGCTTCGACATGATTTCTGAGGAGTCTAGTAGGATTGTTATCACCGATATTGTGTGTAACATGTTGAGGACCGTCATGGATACCACACCCGACGACTTGGTGGCCACTGTATATCTTTTGGCTAATAAGATTGCTCCAGCCCACGAAGGGCTTGAGTTGGGGATTGGGGATTCCTCTATTATCAAAGCTCTTTCTGAGGCTTTTGGAAGGACAGAGGCGCAGGTTAAAAAACAGTACAAGGAACTAGGAGATTTAGGTCTTGTTGCCAAAGCGAGCCGTTCATCGCAGTCCATGATGCGAAAGCCTGATGCTTTAACTATTGCCAAAGTATTTGACACATTTCGGCTGATTGCTAAGGAATCTGGCAAGGATAGTCAAGAGAAGAAAAAGAACCATATCAAGTCACTGCTTGTTGCTGCCACAGACTGTGAACCTTTATATCTGATTAGATTGCTGCAGACAAAATTGCGAATTGGACTTGCTGAACAGACTCTTTTAGCTGCATTAGGCCAAGCTGCTGTGTATGCTGAAAAACACTCTACGCCACCACCAAACATTCAATCTCCTCTAGAAGAGGCTGCTAAGACTGTAAAGCAAGTGTATTCTATACTCCCAGTTTATGATAAACTTGTCCCTGCACTTCTTACTGGTGGTGTGTGGAATCTTTCAAAAACATGCAACTTTACACCAGGTATTCCAATTGGACCCATGCTAGCAAAACCAACAAAGGGAGTGTCCGAGATCTTAAATAAATTCCAGGATTTGGAATTTACTTGTGAATACAAATATGATGGTGAACGTGCACAGATACATTACTTGGAAAATGGTTCAGTTGAGATATACAGTCGAAATGCTGAACGAAACACTGGAAAGTTCCCCGATGTTGTTCTAACGGTATCAAGGGTAAAGAAACCATCTGTAAGATCGTTTATTTTGGATTGTGAACTTGTTGCTTATGATCGTGGAAAACAGAAGATTCTGCCTTTCCAGATTCTGAGTACTCGAGCTCGCAAGAACGTGGCCGTGAGTGATATTAAGGTTGATGTGTGTGTATTTGCCTTTGATTTATTATATCTTGATGGTCAACCACTTATTCAGAGAGAACTTAATGTTCGTCGAGAGCTTCTCTATGATTCATTTATGGAAGAACCTGGGTATTTTCAATTTGCCACCGCAATATTAACAAACGATCTTGAGGAAATACAGAAATTCCTTGATGCATCTGTTGATGAAAGTTGTGAAGGTTTAATTATCAAAACATTGAATAGAGATTCTACTTATGAGCCATCCAAGAGGTCACATAACTGGTTAAAACTGAAGAAGGACTACATAGACAGCATAGGGGATTCACTTGATCTGGTACCAATTGCTGCCTTCCATGGCCGTGGGAAGCGTACAGGTGTCTATGGCGCATTCCTCCTTGCTTGTTACGACAATGATAATGAAGAATTTCAAAGCATTTGTAAGATAGGAACTGGGTTTTCTGAAGCAATGCTTGAGGAACGTTCTACTAGTCTTCGTTCTAAAGTCATTACTGAACCGAAGTCATATTATCGGTATGGAGATACAATCAATCCGGATGTTTGGTTTGAGCCTACGGAGGTTTGGGAGGTTAAAGCAGCAGACTTGACTATTAGCCCAGTTCACCGTGCAGGAGTTGGCATTGTGGATTCTGATAAGGGAATTTCTCTTCGGTTTCCACGTCTTGTTCGTGTAAGGCAAGACAAAACTCCAGAGGAAGCTTCATCATCAGAGCAGGTTGCCGACATGTATAATGCTCAAAAACTCAACCATCAAAATAATCGAGATGATAAAGATGACGACTGA 2421 43.0 MLSLRSCYYLRPVTIALPHPQFKKLIFFNKTHSFKPILPNFVSAMSSRPSAFDALMSGARAAAKKKSATSTSSPKKRKALDSLDPSPKPSSSHTLESMLPVESQCGNSILDNPGGSHLGTAENAVDLGETKLGQDNGGSVGTKNGPAGSKTCATSVQERTAKLKSSIPELKKKAKDFNSKNVACWKEGERVPCLFLCLGFDMISEESSRIVITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDSSIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTIAKVFDTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYAEKHSTPPPNIQSPLEEAAKTVKQVYSILPVYDKLVPALLTGGVWNLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQDLEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVLTVSRVKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVAVSDIKVDVCVFAFDLLYLDGQPLIQRELNVRRELLYDSFMEEPGYFQFATAILTNDLEEIQKFLDASVDESCEGLIIKTLNRDSTYEPSKRSHNWLKLKKDYIDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSTSLRSKVITEPKSYYRYGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSDKGISLRFPRLVRVRQDKTPEEASSSEQVADMYNAQKLNHQNNRDDKDDD 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2368612 2377425 + MC02g0255 Mch2g0315 681237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0315 806 Gene3D DNA ligase/mRNA capping enzyme 463 588 - -
Mch2g0315 806 MobiDBLite consensus disorder prediction 129 151 - -
Mch2g0315 806 FunFam DNA ligase 643 802 - -
Mch2g0315 806 Pfam DNA ligase N terminus 196 367 IPR012308 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Mch2g0315 806 SUPERFAMILY Nucleic acid-binding proteins 646 792 IPR012340 -
Mch2g0315 806 Gene3D - 169 436 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Mch2g0315 806 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 148 803 IPR050191 GO:0003910(PANTHER)|GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0006266(PANTHER)|GO:0006273(PANTHER)
Mch2g0315 806 FunFam DNA ligase 434 640 - -
Mch2g0315 806 ProSitePatterns ATP-dependent DNA ligase signature 2. 612 638 IPR016059 GO:0003909(InterPro)
Mch2g0315 806 CDD Adenylation_DNA_ligase_I_Euk 423 641 - -
Mch2g0315 806 FunFam DNA ligase 169 436 - -
Mch2g0315 806 CDD OBF_DNA_ligase_I 646 791 - -
Mch2g0315 806 MobiDBLite consensus disorder prediction 63 95 - -
Mch2g0315 806 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 458 466 IPR016059 GO:0003909(InterPro)
Mch2g0315 806 Gene3D - 643 805 IPR012340 -
Mch2g0315 806 NCBIfam ATP-dependent DNA ligase 250 789 IPR000977 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0071897(InterPro)
Mch2g0315 806 Pfam ATP dependent DNA ligase domain 434 638 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Mch2g0315 806 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 174 425 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Mch2g0315 806 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 426 644 - -
Mch2g0315 806 Pfam ATP dependent DNA ligase C terminal region 663 774 IPR012309 GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Mch2g0315 806 ProSiteProfiles ATP-dependent DNA ligase family profile. 540 676 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Mch2g0315 806 MobiDBLite consensus disorder prediction 135 151 - -
Mch2g0315 806 Gene3D - 444 642 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0315 Mch-Chr2:2368612 Mch8g2350 Mch-Chr8:26647994 2.37E-159 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0315 K10747 - csv:101213447 1405.19