Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0345 CAAGATGATCTTGAATCATCGACTTTGCCTACTATCAATAGTGGTGGCGTAACGAAGATCATATACAACATCGATGGCACACAAATACCAGAATCGAGCAGCAAGAGGACCAAGGTTTCTGGGAAGTCTGGAAGATCCTTGAGAGCGAAAGTTTTGTCTAGAGTTTTCTCCGAGGATTATGAGAGGGTACAGAGAAAAATATTGGATCCTCGGGGACAAGCCATACGGCGATGGAACAAGATATTCTTAGTAGCTTGTTTAGTCTCTTTGTTCGTAGACCCTCTTTTCTTTTACTTACCCGTGGTTCGAGATGTGGTGTGTATCGATATAGGAGTAGGTCTCGAAGTCATCCTCACAACTATAAGATCGATAGCTGATGTTTTCTACACAATTCAAATTTTTATTAAGTTTCGTACAGCTTTTGTCGCGCCCTCTTCTCGTGTATTTGGGAGAGGAGAGCTTGTTATAGATCCTTGTAAGATAGCAATGAGGTATCTTCGCCACGGTTTCTGGATCGATTTCATTGCAGCCCTGCCAATTCCTCAGGTACTGATCTGGATTGTCATCCCCAACCTTAGTGGTTCAACAATGACAAACACCAAGAACTTCCTTAGGTTCTTTCTCATATTCCAGTACCTCCCAAGACTTTTTCTCATATTTCCACTCTCAACACAAATTGTTAAGGCCACTGGACTTGTGACACAAACAGCATGGGCTGGAGCTGCTTATAACCTGATTCTTTATATGTTGGCAAGCCATGTTTTAGGAGCCTGCTGGTACCTTCTTTCAATTGAGCGACAAGAAGCATGCTGGAGAAGAATTTGTGAGCTTGACAAATCTTGTAAAGTTGGATTCTTTGACTGTCATAAGATCGATGACCCTCTAAGGGACTCTTGGTTTAAGACGAGCAACATTACGAATTCATGCAATCCAAATGATCCCTATTATCAATATGGTATATACGGTGATGCAGTAACTTTCCACGTCACAACCTCGCCATTTTTCAACAAGTACTTCTTCTGTCTTTGGTGGGGCCTGAAAAATCTGAGTTCATTGGGACAAAACCTTGCCACAAGCACTTTTGTTGGAGAAATAATTTTTGCCATAATTGTGGCAACTCTTGGACTGGTTCTGTTTGCATTGCTCATTGGTAATATGCAGAAATATCTCCAATCGACGACAGTTCGATTAGAAGAATGGAGAATAAGGAGAACTGATACAGAGCAATGGATGCATCACAGGCAACTACCTCCAGAACTCAGACAATCTGTCCGCAGATATGATCAGTATAAGTGGGTAGCAACTCGCGGAGTTGATGAAGAAGCTCTGCTCAGAAGCCTCCCATTGGATCTCCGAAGAGACATAAAACGTCACCTTTGCATCGACCTCGTTCGAAGGGTTCCACTGTTTGATCAAATGGATGAAAGAATGTTAGATGCAATTTGCGAGAGGCTTAAACCTGCCTTGAGCACAGAAGGCACATTTCTAGTGCGAGAAGGCGACCCAGTGAACGAAATGCTATTCATAATCCGAGGTCATCTCGATTCATACACCACTAATGGCGGCAGAACTGGGTTCTTCAACTCCTGTCGTATTGGCCCAGGTGATTTCTGTGGTGAGGAGCTCCTGACTTGGGCTCTCGACCCTCGTCCAAGCGTCGTACTTCCTTCTTCCACTCGCACAGTCAAAGCCATCTCCGAAGTCGAAGCATTTGCTCTCATAGCAGAGGACTTGAAATTTGTATCCTCCCAGTTCAGAAGACTCCACAGCAAACAACTCAGACACAAGTTTCGGTTTTACTCGCATCAATGGCGAACGTGGGCTGCGTGCTTTGTTCAAGCAGCATGGCGGCGATATAAGAGACGCAAAGAAAGAGCTGAGCTTATGGCTAGAGAGAGCAGTACAGCTACCAAGCTCGAGTCCTCGCTTCCACCACCAACTGCGTCAAGCTTGAATGCACGATTAGGAAACACTAGAAGAGGGATGGATAAGCGTTGTGTATCGAATGCTGGGGTCGTAAGCTCGTTGCAGAAACCTGAAGAGCCTGACTTTTCAATTGTTGAGGAATGA 2070 44.44 QDDLESSTLPTINSGGVTKIIYNIDGTQIPESSSKRTKVSGKSGRSLRAKVLSRVFSEDYERVQRKILDPRGQAIRRWNKIFLVACLVSLFVDPLFFYLPVVRDVVCIDIGVGLEVILTTIRSIADVFYTIQIFIKFRTAFVAPSSRVFGRGELVIDPCKIAMRYLRHGFWIDFIAALPIPQVLIWIVIPNLSGSTMTNTKNFLRFFLIFQYLPRLFLIFPLSTQIVKATGLVTQTAWAGAAYNLILYMLASHVLGACWYLLSIERQEACWRRICELDKSCKVGFFDCHKIDDPLRDSWFKTSNITNSCNPNDPYYQYGIYGDAVTFHVTTSPFFNKYFFCLWWGLKNLSSLGQNLATSTFVGEIIFAIIVATLGLVLFALLIGNMQKYLQSTTVRLEEWRIRRTDTEQWMHHRQLPPELRQSVRRYDQYKWVATRGVDEEALLRSLPLDLRRDIKRHLCIDLVRRVPLFDQMDERMLDAICERLKPALSTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVVLPSSTRTVKAISEVEAFALIAEDLKFVSSQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKRRKERAELMARESSTATKLESSLPPPTASSLNARLGNTRRGMDKRCVSNAGVVSSLQKPEEPDFSIVEE 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2559871 2563128 + MC02g0282 Mch2g0345 681267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0345 689 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 46 636 - -
Mch2g0345 689 FunFam Cyclic nucleotide-gated ion channel 1 396 460 - -
Mch2g0345 689 FunFam Cyclic nucleotide-gated ion channel 1 467 585 - -
Mch2g0345 689 MobiDBLite consensus disorder prediction 630 662 - -
Mch2g0345 689 Pfam Cyclic nucleotide-binding domain 492 552 IPR000595 -
Mch2g0345 689 CDD CAP_ED 469 600 IPR000595 -
Mch2g0345 689 SMART cnmp_10 469 600 IPR000595 -
Mch2g0345 689 Gene3D - 75 393 - -
Mch2g0345 689 Gene3D Helix hairpin bin 396 460 - -
Mch2g0345 689 PRINTS EAG/ELK/ERG potassium channel family signature 338 355 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch2g0345 689 PRINTS EAG/ELK/ERG potassium channel family signature 250 260 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch2g0345 689 PRINTS EAG/ELK/ERG potassium channel family signature 432 439 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch2g0345 689 PRINTS EAG/ELK/ERG potassium channel family signature 133 142 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch2g0345 689 PRINTS EAG/ELK/ERG potassium channel family signature 382 391 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch2g0345 689 PRINTS EAG/ELK/ERG potassium channel family signature 364 375 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch2g0345 689 ProSiteProfiles cAMP/cGMP binding motif profile. 469 566 IPR000595 -
Mch2g0345 689 Pfam Ion transport protein 77 396 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch2g0345 689 SUPERFAMILY Voltage-gated potassium channels 69 391 - -
Mch2g0345 689 Gene3D Jelly Rolls 467 587 IPR014710 -
Mch2g0345 689 SUPERFAMILY cAMP-binding domain-like 399 594 IPR018490 -
Mch2g0345 689 MobiDBLite consensus disorder prediction 634 656 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0345 Mch-Chr2:2559871 Mch6g0569 Mch-Chr6:3847913 4.36E-264 dispersed
Mch10g0292 Mch-Chr10:1918850 Mch2g0345 Mch-Chr2:2559871 1.59E-111 transposed
Mch10g1135 Mch-Chr10:8508111 Mch2g0345 Mch-Chr2:2559871 4.73E-126 transposed
Mch1g0814 Mch-Chr1:11695435 Mch2g0345 Mch-Chr2:2559871 1.83E-249 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0345 K05391 - csv:101210775 1299.26