Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0348 ATGAAAGAGGCCGAGAAAAATTTAGATCCTCAACTATGGCATGCCTGCGCCGGAGGCATGGTACAGATGCCGGCTGTTAACTCCAAGGTTTTCTACTTCCCTCAAGGCCACGCCGAGCACGCTCAGGCCACCGTCGATTTCACCTCCTCACTCCGAATCCCTGCCCTAATTCCTTGTCGAGTCGTCGCCGTCAAATTCTTGGCCGACCATGAAACCGACGAAGTTTTCGCAAATATAAGATTACTCCCACTGGCAAACAACGACCTCAACAATTTCGACGAAGACGGAGCTTTCGGGAGTAATGGGTCTGACAATAATATGGAGAAACCCGCTTCCTTTGCCAAGACGTTGACCCAATCCGATGCCAACAACGGCGGTGGCTTCTCGGTTCCAAGGTACTGTGCGGAGACGATATTCCCGCGGCTGGATTACACGGCGGATCCGCCGGTTCAGACGGTGATTGCCAAGGATGTTCACGGCGAAGTTTGGAAATTCCGGCATATTTACAGGGGGACGCCTCGGCGGCATTTGTTAACGACTGGATGGAGTACTTTTGTGAATCAAAAGAAGCTGGTCGCCGGCGATTCGATTGTTTTTCTGAGATCCAAAAACGGTGACCTCTGCGTCGGAATCCGGCGAGCCAAGCGAGCAATTGGGTCTGCCGCCGAGAGCCCATATGGGTGGAATCCCGGCGGTGGGAATTGCATCCCGCCTTACGGTGGATTGACAATGTTTCTGAGAGAGGAGGAGAGCAAGTTGAGTAGAAAAGGTTGCTTGAGTTCCAGTGGTGGTGGGAATTTGAGGGGAAAAGAGAGAGTGAGGCCGGAATCAGTAATTGAAGCAGCGGCGCTGGCGGCGGGTGGGCAGGCGTTTGAGGTGGTTTATTACCCACGTGCGAGCACGCCTGAGTTCTGTGTGAAGGCCTCATCGGTGCGAGCCGCGATGAGAATCCAGTGGTGCTCTGGTATGAGATTCAAGATGCCATTTGAAACTGAGGATTCTTCTCGAATTAGTTGGTTCATGGGCACAATTTCTTCTGTTCAAGTTGCTGATCCTATCCGCTGGCCTAATTCTCCATGGCGCCTTCTCCAGGTAACATGGGATGAGCCAGATTTGCTGCAGAATGTGAAGCGTGTTAGCCCTTGGTTGGTTGAACTGGTATCGAACATGCCCGTCATTCAACTATCACCATTCTCTCCACCGAGAAAGAAGTTTCGACTACCACAACACCCAGACTTTCCCCTCGACGGCCAATTCCCATTTTCGTCGTTTTCAAGCAATACCCTAAGGCCAAGCAGCCCCATGTGTTGTTTATCTGATAACACTTCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGAATATCTTTATCAGATTTCCATCTCAACAACAAACTGCAATTAGGGCTGGTCCCATCCAGTTTTCAGCAGCTTGATTTTCACTCTAGAAGTTCCAATAGATCAGTTAAAGACCACAGAGACAGCAGCAGTCAGAACTCACCGGTGTTGCTAACCGGGGAAAATACCGGTCCAAAGTTGGAACGATCTGATTCGGTGAAGAAACATCAGTTTTTACTCTTTGGTCAACCTATACTCACTGAACAGCAGATCACTTGCAGCTCTTCTGGTGACATTCGCTCACCTCAGACGGAGAAAAGCTCCTTGAATGTGAATCTGGAGAGAGTGAAGTTTTTATCTGATGGCTCAGGATCCACTTTCAAGCAGCAAATTTCTCCAAATAAGTCACCAGGAGCAGGATTTCCATGGTACCATGGTTACCAAGCCACTGAACTTGGCCTAGACATTGGTCACTGCAAGGTATTCATGGAGTCGGAAGACGTGGGCCGAACACTCAATCTTTCAGTCATTGGCTCATATGAAGAACTATACAGGAGGCTCGCGAACATGTTCGGGATGGAAAAACCAGACATTCTCAGCCATGTGCTGTACCAAGATGCAACAGGTGCTCTCAAACAAGCTGGAGATAAACCATTCAGTGATTTTATCAAAACAGCTAGAAGACTGACAATTCTAACAGACTCGAGGCCCGACAAGATCGGGAGGACATTGATGGATGGAATGCGCAATGCTGAAAATGGATTAGATGCCTCAAACAAGACTGGCCCCTTGAGCATATTTGCGTAG 2148 49.3 MKEAEKNLDPQLWHACAGGMVQMPAVNSKVFYFPQGHAEHAQATVDFTSSLRIPALIPCRVVAVKFLADHETDEVFANIRLLPLANNDLNNFDEDGAFGSNGSDNNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAIGSAAESPYGWNPGGGNCIPPYGGLTMFLREEESKLSRKGCLSSSGGGNLRGKERVRPESVIEAAALAAGGQAFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSPPRKKFRLPQHPDFPLDGQFPFSSFSSNTLRPSSPMCCLSDNTSAGIQGARHTQFGISLSDFHLNNKLQLGLVPSSFQQLDFHSRSSNRSVKDHRDSSSQNSPVLLTGENTGPKLERSDSVKKHQFLLFGQPILTEQQITCSSSGDIRSPQTEKSSLNVNLERVKFLSDGSGSTFKQQISPNKSPGAGFPWYHGYQATELGLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGALKQAGDKPFSDFIKTARRLTILTDSRPDKIGRTLMDGMRNAENGLDASNKTGPLSIFA 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2596558 2600810 + MC02g0285 Mch2g0348 681270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0348 715 Pfam Auxin response factor 281 364 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch2g0348 715 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 685 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch2g0348 715 ProSiteProfiles PB1 domain profile. 603 686 IPR053793 -
Mch2g0348 715 Gene3D - 603 687 - -
Mch2g0348 715 FunFam Auxin response factor 319 392 - -
Mch2g0348 715 ProSiteProfiles B3 DNA-binding domain profile. 113 215 IPR003340 GO:0003677(InterPro)
Mch2g0348 715 Gene3D - 111 215 IPR015300 -
Mch2g0348 715 SMART B3_2 113 215 IPR003340 GO:0003677(InterPro)
Mch2g0348 715 MobiDBLite consensus disorder prediction 483 516 - -
Mch2g0348 715 Pfam B3 DNA binding domain 113 214 IPR003340 GO:0003677(InterPro)
Mch2g0348 715 SUPERFAMILY DNA-binding pseudobarrel domain 109 220 IPR015300 -
Mch2g0348 715 Gene3D - 319 392 - -
Mch2g0348 715 FunFam Auxin response factor 111 215 - -
Mch2g0348 715 CDD B3_DNA 112 213 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0348 Mch-Chr2:2596558 Mch4g2052 Mch-Chr4:22773171 1.27E-269 dispersed
Mch10g0821 Mch-Chr10:5729867 Mch2g0348 Mch-Chr2:2596558 1.74E-11 transposed
Mch5g1579 Mch-Chr5:16769191 Mch2g0348 Mch-Chr2:2596558 3.64E-12 transposed
Mch1g0809 Mch-Chr1:11657507 Mch2g0348 Mch-Chr2:2596558 8.05e-313 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42862 PF02362 B3 1.40E-21 CL0405 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0348 K14486 - csv:101216500 1335.86