Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0351 ATGGCCATGGCTATAGCTCATCACAGAGAGAGTAGTAGTGGGAGCATAACCAGGCATCTCGACAGTACTGGAAAGTACGTTCGGTATACAGCAGAGCAGGTCGAGGCTCTTGAGCGAGTCTATGCTGAGTGCCCGAAGCCAAGTTCTCTTCGGAGGCAGCAGCTGATTCGGGAGTGCCCAATTCTTTCCAACATAGAGCCCAAGCAGATCAAAGTTTGGTTCCAGAATCGAAGGTGTAGGGAGAAGCAGAGGAAGGAGGCTTCTCGGCTGCAAACAGTGAACAGGAAATTGAATGCTATGAATAAGTTGTTGATGGAGGAGAATGATCGGCTGCAGAAACAAGTGTCGCAGTTGGTGTGTGAAAATGGGTATATGCGGCAGCAGTTGCAAACGGTGCCCACCGCAACCACTGATGCAAGTTGCGATTCTGTGGTCACCACTCCTCAAACCTCCCGAAGAGATGCTACTAACCCAGCTGGACTCCTCTCAATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAAGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATCTTTGCCATTTCACAAAGTTGTGGCGGAGTGGCAGCAAGAGCCTGTGGTCTTGTTAGTTTTCTACAGATTGCAGAGATCCTTAAAGATCGTCCATCTTGGTTTCGCGATTGTCGGAGCCTTGAGGTTTTTACCATGTTTCCAGCTGGAAATGGTGGGACAATTGAACTTGTTTACACACAGGTATATGCTCCGACTACCCTTGCTCCTGCATGTGATTTTTGGACTCTAAGATACACGATAACTTTGGAAAACGGCAGCCTTGTGGTTTGCGAGAGATCTCTCTCTGGTTCTGGGGCTGGTCCTAGTGCAACTGCTGCTGCTCAGTTTGTGAGAGCTGAGATGCTCCCAAGTGGCTATCTGATTCGACCATGTGAGGGTGGTGGGTCCATCATACATATAGTAGATCACCTAAATCTTGAGGCATGGAATGTTCCTGAGGTGCTGCGACCACTTTATGAATCATCAAAAGTAGTGGCTCAGAAGATGACTATAGCAGCACTGCGCTACGTTAGGCAAATAGCTCAGGAGACGAGTGGTGAAGTGGTATATGGTTTGGGCAGGCAACCTGCTGTTCTGCGAACTTTTAGCCAAAGATTGAGCAGGGGCTTTAATGATGCAGTGAATGGATTTAATGACAATGGATGGTCATTGATTAATTGCGATGGTGCTGAGGACGTGGTACTCGCTGTGAATTCTACGAAAAACTTGGGCACAACATCTAACCCTGCTAACTCCTTAACGTATCCTGGGGGAGTTCTTTGTGCAAAGGCTTCCATGCTACTCCAAAATGTTCCTCCTGCTGTTCTAGTTCGTTTCTTGAGAGAACATCGCTCGGAGTGGGCTGATTTCAACATTGATGCATACTCTGCAGCAACCCTTAAAGCTAATTCATATGCATATCCAGGGATGAGACCCACAAGGTTTACTGGTAGTCAAATCATCATGCCACTTGGCCACACGATAGAACATGAAGAGTTGCTTGAAGTAATTCGACTTGAAGGACATCCTATGGTGCAAGAAGATGCTTTTGTGTCAAGGGACATTCATCTCCTTCAGATTTGTAGTGGAATCGATGAGAATGCTGTTGGAGCCTGTTCAGAACTCATTTTTGCTCCAATCGACGAGATGTTTCCAGACGATGCCCCATTGCTGCCTTCTGGCTTTCGAATCATCCCATTGGATTCCAAAACAGTTGAGAACGTTGTTTCACTTGAATTTGCATTACTCCTTCGTCTTCATCAGCAGCAAACTTCTAGTCGTAACTATAATTTGAATTCTATGGACACCGTTATTTCCATCCTGGATTTTTACTTAGGTACATTGACTACTCAACGAACCCTTGATCTAACATCGAGTCTTGAAGTGGGCTCTGGAACAAGCAACAGTGCTGGAGATGTATCGTCAAGTCATAGCCCTAGATCAGTGTTAACTATCGCGTTCCAGTTTCCTTTTGAAAGCAGCATGCAGGATAATGTAGCGAACATGGCACACCAGTATGTACGGAGCGTCATTTCCTCAGTACAGAGAGTTGCCATGGCCATATCTCCATCTGGGTGCAGCCCAGCGCTAGGCCCAAAGCTCTCTCCTGGTTCTCCAGAAGCTCTTACTCTAGCACATTGGATATGCAAGAGCTATAGTTTCCAATTGGGAGCGGAGTTGATCAGGTCAGATTCCATGGAAAGTGATTCCCTGTTGAAGAATCTCTGGGATCATCAGGATGCAATATTATGTTGTTCATTGAAGCAGTCGCTGCCAGTTTTCATGTTTGCAAACCAATCCGGACTTGACATGTTGGAGACAACTCTAGTAGCCTTACAAGACATCACACTGGATAAGATTTTCGATGAGTCGGGCCGCAAAGCTTTGTGTTCGGATTTCCCCAAGTTAATGCAGCAGGGATTTGCATACTTGCCTGGAGGAATCTGCGCATCGACAATGGGGCGTCACGTTTCGTACGAACAAGCCGTTGCATGGAAAGTCCTCGAGGCAGACGAGACAACAGTCCATTGCCTTGCCTTCTCCTTCATAAACTGGTCTTTTGTTTGA 2640 46.86 MAMAIAHHRESSSGSITRHLDSTGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGYMRQQLQTVPTATTDASCDSVVTTPQTSRRDATNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSFLQIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVYAPTTLAPACDFWTLRYTITLENGSLVVCERSLSGSGAGPSATAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKVVAQKMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDNGWSLINCDGAEDVVLAVNSTKNLGTTSNPANSLTYPGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFNIDAYSAATLKANSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHPMVQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSKTVENVVSLEFALLLRLHQQQTSSRNYNLNSMDTVISILDFYLGTLTTQRTLDLTSSLEVGSGTSNSAGDVSSSHSPRSVLTIAFQFPFESSMQDNVANMAHQYVRSVISSVQRVAMAISPSGCSPALGPKLSPGSPEALTLAHWICKSYSFQLGAELIRSDSMESDSLLKNLWDHQDAILCCSLKQSLPVFMFANQSGLDMLETTLVALQDITLDKIFDESGRKALCSDFPKLMQQGFAYLPGGICASTMGRHVSYEQAVAWKVLEADETTVHCLAFSFINWSFV 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2628845 2635654 - MC02g0288 Mch2g0351 681273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0351 879 CDD START_ArGLABRA2_like 158 372 - -
Mch2g0351 879 Gene3D - 19 91 - -
Mch2g0351 879 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
Mch2g0351 879 SUPERFAMILY Bet v1-like 163 373 - -
Mch2g0351 879 Coils Coil 80 121 - -
Mch2g0351 879 SMART START_1 163 371 IPR002913 GO:0008289(InterPro)
Mch2g0351 879 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677(InterPro)
Mch2g0351 879 CDD homeodomain 25 85 IPR001356 GO:0003677(InterPro)
Mch2g0351 879 SMART HOX_1 22 88 IPR001356 GO:0003677(InterPro)
Mch2g0351 879 Pfam Homeodomain 25 83 IPR001356 GO:0003677(InterPro)
Mch2g0351 879 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
Mch2g0351 879 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 626 879 IPR044830 GO:0003700(InterPro)
Mch2g0351 879 CDD bZIP 77 116 - -
Mch2g0351 879 ProSiteProfiles START domain profile. 154 380 IPR002913 GO:0008289(InterPro)
Mch2g0351 879 Pfam MEKHLA domain 734 878 IPR013978 -
Mch2g0351 879 Pfam START domain 164 370 IPR002913 GO:0008289(InterPro)
Mch2g0351 879 Gene3D - 203 376 IPR023393 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g2089 Mch-Chr1:20268520 Mch2g0351 Mch-Chr2:2628845 0 dispersed
Mch2g0351 Mch-Chr2:2628845 Mch3g0939 Mch-Chr3:13279452 0 dispersed
Mch2g0351 Mch-Chr2:2628845 Mch3g0603 Mch-Chr3:10446956 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42863 PF01852 START 1.20E-41 CL0209 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0351 K09338 - csv:101215773 1551.18