Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0367 ATGGAAATTGATCTGAACCAAACAGCAAGTGAGGTGGGCAAGAATGCATATTGCAATGGGAATTGTGACGAGGGCCGTTGCAATTGTTGTTTATCCTCTTCAACTTCTTCATGTTCCTCAAATTCTTCGTCAACTCCCGTCTCTTCTTCAACTTATTTGGAGCTTTGGCATGCTTGTGCTGGCCCTCTCACCTCATTGCCCAAGAAAGGAAATGTAGTTGTCTACTTCCCACAAGGTCACTTGGAGCAGATTGCCTCCTCAGCCTCCCCCTTTTCCCCCATGGAGATGCGCCCTTTTGACCTCCACCCACAGATCCTCTGCAAAGTCACCAATGTCCAACTACTTGCCAATAAGGAGAATGATGAGGTCTACACACAACTTACTCTACTTCCCTTACCAGAGGTAGCTTTCAACTACTCAATTTATTTATTTTGGAATGGGAGCGGAGGATCGCCTACTAGATCTACACCTCACATGTTCTGCAAAACACTCACAGCATCTGACACCAGTACCCACGGAGGGTTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGTTTCCCAACTCTGGATTACACTCAACTTAGGCCATCTCAAGAGCTAATAGCCAAGGACCTGCATGGCGTGGAGTGGAGGTTTAAACATATCTACAGAGGTCAACCCAGGCGGCATCTGCTCACTACTGGGTGGAGTATTTTTGTAAGCCAAAAGAATCTTATTTCTGGAGATGCGGTGCTCTTTCTAAGGGGTGAAAATGGAGAGCTAAGGTTGGGAATAAGGAGAGCTGTTCGGCCTAGAAATGGTCTTCCTGATTCAATTGTTGGCAACCAAAATTCTTGTGCAAACGATCTTGCTTGTGTGGTGAAAGCAATATCCACCAAGAGCATGTTTGATGTGTTTTACAATCCAAGGGCATATCATGCACAGTTTATTATATCTTGCCAAAAGTATGTGAAGAGCATCAATAATCCGGTGATCATAGGCACAAGATTCAAAATGAGATTTGAGATGGATGACTCTCCAGAAAGAAGGTTTAGTGGTGTAGTTATTGAAATTGGTGACATGGATCCCTTTAGATGGCCGAACTCAAAGTGGAGATGCTTGATGGTCCAATGGGATAAAGACAGTGATCATCAAGAACGTGTTTCCCCCTGGGAGATTGATCCTTCTGTTGCTCTCCCACACTTGAGTGTTCAGTCTTCTCCAAGGTTGAAGAAACTGAGGACTAGTCTGCAGGCCCCACCTAATAACCCCTTTACTGGGAGGGGCGGTTTTATGGACTTTGAGGATTCAATTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGTCTCGTATCACCCTTTTATGGGCGTGATACTGCGAAATGTTCGCTGGAGTTTGAGGTGCGATCTTCTGCACAACAGAATCAAGCCTCGGGTGGAGTTGAAAAGCTAAATATAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACCAACAAGAAAAGCAGAATATAG 1503 45.04 MEIDLNQTASEVGKNAYCNGNCDEGRCNCCLSSSTSSCSSNSSSTPVSSSTYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQIASSASPFSPMEMRPFDLHPQILCKVTNVQLLANKENDEVYTQLTLLPLPEVAFNYSIYLFWNGSGGSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPTLDYTQLRPSQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSIFVSQKNLISGDAVLFLRGENGELRLGIRRAVRPRNGLPDSIVGNQNSCANDLACVVKAISTKSMFDVFYNPRAYHAQFIISCQKYVKSINNPVIIGTRFKMRFEMDDSPERRFSGVVIEIGDMDPFRWPNSKWRCLMVQWDKDSDHQERVSPWEIDPSVALPHLSVQSSPRLKKLRTSLQAPPNNPFTGRGGFMDFEDSIRSSKVLQGQENVGLVSPFYGRDTAKCSLEFEVRSSAQQNQASGGVEKLNIGLARSRNMLIEATNKKSRI 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2735698 2747906 + MC02g0303 Mch2g0367 681289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0367 500 CDD B3_DNA 158 260 IPR003340 GO:0003677(InterPro)
Mch2g0367 500 Gene3D - 324 393 - -
Mch2g0367 500 FunFam Auxin response factor 158 262 - -
Mch2g0367 500 Pfam Auxin response factor 287 367 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch2g0367 500 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 423 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch2g0367 500 SUPERFAMILY DNA-binding pseudobarrel domain 153 271 IPR015300 -
Mch2g0367 500 Pfam B3 DNA binding domain 160 261 IPR003340 GO:0003677(InterPro)
Mch2g0367 500 Gene3D - 158 262 IPR015300 -
Mch2g0367 500 SMART B3_2 160 262 IPR003340 GO:0003677(InterPro)
Mch2g0367 500 FunFam Auxin response factor 323 393 - -
Mch2g0367 500 ProSiteProfiles B3 DNA-binding domain profile. 160 262 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1903 Mch-Chr1:18958090 Mch2g0367 Mch-Chr2:2735698 1.63E-138 dispersed
Mch1g2064 Mch-Chr1:20009579 Mch2g0367 Mch-Chr2:2735698 1.32E-106 dispersed
Mch2g0367 Mch-Chr2:2735698 Mch6g0012 Mch-Chr6:110952 4.32E-124 dispersed
Mch2g0367 Mch-Chr2:2735698 Mch3g0963 Mch-Chr3:13472960 2.56E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42865 PF02362 B3 5.50E-21 CL0405 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0367 K14486 - csv:101212503 833.172