Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch2g0398 | ATGGATTTCTCCCTCAAGTCATTCAAATCCCACGGCTCCTACAAGTATGCGAGGAAGCTTTCTGGGGGTGGAGGAGCAGACGATAGTCAAGAACAGCTACCGATTCTTTCAGATCAGGACCCGGGTAATCTTCACCAGCAACAGTCCATGGCGGTGTCTGATGCTTCTGACCGGAACGAGGTCATCGTCAAGATCGATCAGCCCGACTCTTTGAATGCGACGTCAAGAGTAATGGAGGCGGTGAACGCCAGTGGGAGGATTTGGCGGGAGTCGAGCTACGATTTCTGGAATGATGGTGATGGTAGGCGAAGTAATGCTGAAGGTTCTAATGGCGATGGTAGGAGTGAGGATTTCGAGTTTAGGCAACATAGGCAGGGTGTGGAAGATCCGCCTTCGAAGCTTATTGGACAGTTTCTGCACAAACAGAAGGCGTCCGGGGAGATGTCCTTGGATATGGATATGGAAATGTTGGAACTACCGCAGGATAAGACGTTGCCTCCGGTGGCGGAGTCTCCGATGCGTCGGAGCTCGAAGGAGTTGAAGGTCTCGTTCGAGTCTATCTCAGAGATTTCTGAAAACGATTCGATGCGAAGACGGCATAGGGACTCGCCGGCCGATGAGGAGTATAAAGGACAGCAACCGCCGCAGCGCGATCGTCGAGCATACGGCAATGGTCACGATGACGGTGGTGCCGAGGTTGTGAGATGCACATCCAATTCATCTTTTCAGAGAGACGTATCATTCCAGAGAAAATCTAGCTTGCTTAGGGCTAAGACTAAGTCCAGATTGTTGGACCCGCCGGAGCAGCCGGACCGGAGGTCCGGCGTCCGGTCCGGCCGTGTACCCCCAAAATCAGGACAAATCCGCTCCGGATTGTTGTCAAAAGCCTTGGACGAGGAAGACGATGATCCATTCTTGGAAGAAGATCTACCAGATGAGTATAAGAAATCCAATCTTGGTGCTCTGACTCTGTTACAATGGGCGAGTTTGATTTTGATCATCGCTGCCTTGGTTTGCACTCTGTCAATTCCCTATTTGAACCGAAAGAATCTATGGAAGCTCAAATTATGGAAATGGGAGGTCATGGTTCTAGTTCTGATTTGCGGGAGGCTGGTTTCTGGGTGGGGGATTAGGATAATCGTGTTCTTCATCGAGAGAAACTTTCTACTGCGTAAACGGGTTCTATACTTTGTGTATGGGGTCAGAAAAGCAGTCCAGAATTGTCTTTGGTTGGGACTGGTTTTAATTGCTTGGAACTTTCTGTTTGATGACAAAGTTCAAAGAGAAGTCAAAAGCAATGCCCTAGAGTATGTGACCAAAGTTCTAGTATGTCTTCTGGTGAGCACCTTAGTTTGGTTGGTGAAGACCCTAATGGTGAAGGTGCTCGCCTCCTCTTTCCATGTGAGCACATATTTTGACAGGATTCAGGATGCTCTGTTTAACCAGTATGTAATCGAGACGCTGTCGGGGCCGCCATTGATAGAGATTCGAAAGAACGAGGAAGAAGAAGAGAGGCTTGCAGAAGAGGTTATGAAGTTGCAGAATGCAGGGGCCACCATTCCCCCTGATCTGAAGGCCACTGCCTTCTCCACTGCAAAGGGTGGGAGGGTGATTGGGAGTGGAGGGCTGCAGAGAAGCCCCCGCGGAAGAAGCGGCAAGCTCTCTCGGTCGCTGTCGAAGAATGGCGACGACGGTATAACCATTGATCATCTGCATAAGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGGCTGATGAACATTGTTCGACATGGGGCTCTTTCAACTTTGGACGAACAGATCAAGGATTCAACTCATGAGGAAGACGAGTCAGCAACACAGATAAAGAGTGAATGCGAGGCAAAAGTTGCTGCCAAGAAGATTTTTCAGAACGTGGCCAGGCATGGTTCCAAATACATCTACCTAGAGGACTTGATGCGTTTCATGCAAGAAGATGAAGCTTTAAAAACCATGAGTCTCTTCGAAGGAGCATCTGAGAGCAGGAAAATAAGCAAGTCATCCTTGAAAAACTGGGTGGTCAATGCCTTCAGAGAGCGGAGGGCCTTGGCTTTGACACTAAACGATACTAAAACAGCTGTGAATAAACTTCACCGTATGGTGAATATTTTAGTTTCTGTTGTTATCCTGGTTATTTGGTTACTGATTCTGGGTATAGCCACCAGCAAGTTTCTCCTATTTGTAACCTCTCAACTTGTGCTAGTGGCATTTGTATTTGGAAATACTTGCAAGACTGTTTTTGAAGCAATCATCTTCTTATTTGTGATGCATCCATTCGATGTTGGAGACCGGTGTGAAATCGATGGCGTCCAGATGATTGTAGAAGAAATGAATATTTTGACGACCATCTTTCTACGATACGACAACCAGAAGATCGTCTTTCCGAACAGCGTTCTTGCAACCAAGGCCATCCACAATTTCTACCGCAGTCCCGACATGGGAGACGCTGTTGAATTCTGTCTTCACATATCTACTCCGCCCGAAAAAATTGCTGTCATGAGACAGAGAATAGTAAGTTACATTGAGGCCAAGAAGGAGCACTGGTGCCCTGCACCAATGATTGTCTTCAAGGATGTGGAAGAGTTGAACAGGCTAAGAATAGCGATATGGCTTACTCATAGAATGAACCATCAAGACATGGGAGAGAGATGGACAAGGAGAGCTCTCTTGGTTGAAGAACTGCTTAAGATTTTCCAAGAGCTTGACCTTCAATACCGTCTTCTACCGCTCGATATTAATGTCCGTACCTTGCCTCCGGTGAACTCTACCAGGCTTCCAGCTACTTGGACAGCCACTACAAGTTGA | 2829 | 47.44 | MDFSLKSFKSHGSYKYARKLSGGGGADDSQEQLPILSDQDPGNLHQQQSMAVSDASDRNEVIVKIDQPDSLNATSRVMEAVNASGRIWRESSYDFWNDGDGRRSNAEGSNGDGRSEDFEFRQHRQGVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPQDKTLPPVAESPMRRSSKELKVSFESISEISENDSMRRRHRDSPADEEYKGQQPPQRDRRAYGNGHDDGGAEVVRCTSNSSFQRDVSFQRKSSLLRAKTKSRLLDPPEQPDRRSGVRSGRVPPKSGQIRSGLLSKALDEEDDDPFLEEDLPDEYKKSNLGALTLLQWASLILIIAALVCTLSIPYLNRKNLWKLKLWKWEVMVLVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSNALEYVTKVLVCLLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIRKNEEEEERLAEEVMKLQNAGATIPPDLKATAFSTAKGGRVIGSGGLQRSPRGRSGKLSRSLSKNGDDGITIDHLHKLSPKNVSAWNMKRLMNIVRHGALSTLDEQIKDSTHEEDESATQIKSECEAKVAAKKIFQNVARHGSKYIYLEDLMRFMQEDEALKTMSLFEGASESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVVILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTIFLRYDNQKIVFPNSVLATKAIHNFYRSPDMGDAVEFCLHISTPPEKIAVMRQRIVSYIEAKKEHWCPAPMIVFKDVEELNRLRIAIWLTHRMNHQDMGERWTRRALLVEELLKIFQELDLQYRLLPLDINVRTLPPVNSTRLPATWTATTS | 942 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2916034 | 2922748 | - | MC02g0328 | Mch2g0398 | 681320 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch2g0398 | 942 | MobiDBLite | consensus disorder prediction | 536 | 561 | - | - | |
Mch2g0398 | 942 | MobiDBLite | consensus disorder prediction | 261 | 278 | - | - | |
Mch2g0398 | 942 | FunFam | Predicted mechanosensitive ion channel | 766 | 815 | - | - | |
Mch2g0398 | 942 | MobiDBLite | consensus disorder prediction | 257 | 288 | - | - | |
Mch2g0398 | 942 | MobiDBLite | consensus disorder prediction | 191 | 226 | - | - | |
Mch2g0398 | 942 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 45 | 939 | IPR016688 | GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER) | |
Mch2g0398 | 942 | MobiDBLite | consensus disorder prediction | 32 | 55 | - | - | |
Mch2g0398 | 942 | Pfam | Mechanosensitive ion channel, beta-domain | 759 | 815 | IPR006685 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch2g0398 | 942 | PIRSF | Memb_At2g17000 | 45 | 942 | IPR016688 | - | |
Mch2g0398 | 942 | MobiDBLite | consensus disorder prediction | 161 | 233 | - | - | |
Mch2g0398 | 942 | MobiDBLite | consensus disorder prediction | 17 | 58 | - | - | |
Mch2g0398 | 942 | Coils | Coil | 496 | 519 | - | - | |
Mch2g0398 | 942 | Gene3D | - | 766 | 815 | IPR023408 | - | |
Mch2g0398 | 942 | SUPERFAMILY | Sm-like ribonucleoproteins | 756 | 815 | IPR010920 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0398 | Mch-Chr2:2916034 | Mch6g0955 | Mch-Chr6:6757565 | 1.36E-159 | dispersed | |
Mch11g0085 | Mch-Chr11:543000 | Mch2g0398 | Mch-Chr2:2916034 | 1.05E-231 | transposed | |
Mch2g0398 | Mch-Chr2:2916034 | Mch4g0458 | Mch-Chr4:2930402 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch2g0398 | K22048 | - | csv:101210264 | 1502.26 |