Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0398 ATGGATTTCTCCCTCAAGTCATTCAAATCCCACGGCTCCTACAAGTATGCGAGGAAGCTTTCTGGGGGTGGAGGAGCAGACGATAGTCAAGAACAGCTACCGATTCTTTCAGATCAGGACCCGGGTAATCTTCACCAGCAACAGTCCATGGCGGTGTCTGATGCTTCTGACCGGAACGAGGTCATCGTCAAGATCGATCAGCCCGACTCTTTGAATGCGACGTCAAGAGTAATGGAGGCGGTGAACGCCAGTGGGAGGATTTGGCGGGAGTCGAGCTACGATTTCTGGAATGATGGTGATGGTAGGCGAAGTAATGCTGAAGGTTCTAATGGCGATGGTAGGAGTGAGGATTTCGAGTTTAGGCAACATAGGCAGGGTGTGGAAGATCCGCCTTCGAAGCTTATTGGACAGTTTCTGCACAAACAGAAGGCGTCCGGGGAGATGTCCTTGGATATGGATATGGAAATGTTGGAACTACCGCAGGATAAGACGTTGCCTCCGGTGGCGGAGTCTCCGATGCGTCGGAGCTCGAAGGAGTTGAAGGTCTCGTTCGAGTCTATCTCAGAGATTTCTGAAAACGATTCGATGCGAAGACGGCATAGGGACTCGCCGGCCGATGAGGAGTATAAAGGACAGCAACCGCCGCAGCGCGATCGTCGAGCATACGGCAATGGTCACGATGACGGTGGTGCCGAGGTTGTGAGATGCACATCCAATTCATCTTTTCAGAGAGACGTATCATTCCAGAGAAAATCTAGCTTGCTTAGGGCTAAGACTAAGTCCAGATTGTTGGACCCGCCGGAGCAGCCGGACCGGAGGTCCGGCGTCCGGTCCGGCCGTGTACCCCCAAAATCAGGACAAATCCGCTCCGGATTGTTGTCAAAAGCCTTGGACGAGGAAGACGATGATCCATTCTTGGAAGAAGATCTACCAGATGAGTATAAGAAATCCAATCTTGGTGCTCTGACTCTGTTACAATGGGCGAGTTTGATTTTGATCATCGCTGCCTTGGTTTGCACTCTGTCAATTCCCTATTTGAACCGAAAGAATCTATGGAAGCTCAAATTATGGAAATGGGAGGTCATGGTTCTAGTTCTGATTTGCGGGAGGCTGGTTTCTGGGTGGGGGATTAGGATAATCGTGTTCTTCATCGAGAGAAACTTTCTACTGCGTAAACGGGTTCTATACTTTGTGTATGGGGTCAGAAAAGCAGTCCAGAATTGTCTTTGGTTGGGACTGGTTTTAATTGCTTGGAACTTTCTGTTTGATGACAAAGTTCAAAGAGAAGTCAAAAGCAATGCCCTAGAGTATGTGACCAAAGTTCTAGTATGTCTTCTGGTGAGCACCTTAGTTTGGTTGGTGAAGACCCTAATGGTGAAGGTGCTCGCCTCCTCTTTCCATGTGAGCACATATTTTGACAGGATTCAGGATGCTCTGTTTAACCAGTATGTAATCGAGACGCTGTCGGGGCCGCCATTGATAGAGATTCGAAAGAACGAGGAAGAAGAAGAGAGGCTTGCAGAAGAGGTTATGAAGTTGCAGAATGCAGGGGCCACCATTCCCCCTGATCTGAAGGCCACTGCCTTCTCCACTGCAAAGGGTGGGAGGGTGATTGGGAGTGGAGGGCTGCAGAGAAGCCCCCGCGGAAGAAGCGGCAAGCTCTCTCGGTCGCTGTCGAAGAATGGCGACGACGGTATAACCATTGATCATCTGCATAAGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGGCTGATGAACATTGTTCGACATGGGGCTCTTTCAACTTTGGACGAACAGATCAAGGATTCAACTCATGAGGAAGACGAGTCAGCAACACAGATAAAGAGTGAATGCGAGGCAAAAGTTGCTGCCAAGAAGATTTTTCAGAACGTGGCCAGGCATGGTTCCAAATACATCTACCTAGAGGACTTGATGCGTTTCATGCAAGAAGATGAAGCTTTAAAAACCATGAGTCTCTTCGAAGGAGCATCTGAGAGCAGGAAAATAAGCAAGTCATCCTTGAAAAACTGGGTGGTCAATGCCTTCAGAGAGCGGAGGGCCTTGGCTTTGACACTAAACGATACTAAAACAGCTGTGAATAAACTTCACCGTATGGTGAATATTTTAGTTTCTGTTGTTATCCTGGTTATTTGGTTACTGATTCTGGGTATAGCCACCAGCAAGTTTCTCCTATTTGTAACCTCTCAACTTGTGCTAGTGGCATTTGTATTTGGAAATACTTGCAAGACTGTTTTTGAAGCAATCATCTTCTTATTTGTGATGCATCCATTCGATGTTGGAGACCGGTGTGAAATCGATGGCGTCCAGATGATTGTAGAAGAAATGAATATTTTGACGACCATCTTTCTACGATACGACAACCAGAAGATCGTCTTTCCGAACAGCGTTCTTGCAACCAAGGCCATCCACAATTTCTACCGCAGTCCCGACATGGGAGACGCTGTTGAATTCTGTCTTCACATATCTACTCCGCCCGAAAAAATTGCTGTCATGAGACAGAGAATAGTAAGTTACATTGAGGCCAAGAAGGAGCACTGGTGCCCTGCACCAATGATTGTCTTCAAGGATGTGGAAGAGTTGAACAGGCTAAGAATAGCGATATGGCTTACTCATAGAATGAACCATCAAGACATGGGAGAGAGATGGACAAGGAGAGCTCTCTTGGTTGAAGAACTGCTTAAGATTTTCCAAGAGCTTGACCTTCAATACCGTCTTCTACCGCTCGATATTAATGTCCGTACCTTGCCTCCGGTGAACTCTACCAGGCTTCCAGCTACTTGGACAGCCACTACAAGTTGA 2829 47.44 MDFSLKSFKSHGSYKYARKLSGGGGADDSQEQLPILSDQDPGNLHQQQSMAVSDASDRNEVIVKIDQPDSLNATSRVMEAVNASGRIWRESSYDFWNDGDGRRSNAEGSNGDGRSEDFEFRQHRQGVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPQDKTLPPVAESPMRRSSKELKVSFESISEISENDSMRRRHRDSPADEEYKGQQPPQRDRRAYGNGHDDGGAEVVRCTSNSSFQRDVSFQRKSSLLRAKTKSRLLDPPEQPDRRSGVRSGRVPPKSGQIRSGLLSKALDEEDDDPFLEEDLPDEYKKSNLGALTLLQWASLILIIAALVCTLSIPYLNRKNLWKLKLWKWEVMVLVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSNALEYVTKVLVCLLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIRKNEEEEERLAEEVMKLQNAGATIPPDLKATAFSTAKGGRVIGSGGLQRSPRGRSGKLSRSLSKNGDDGITIDHLHKLSPKNVSAWNMKRLMNIVRHGALSTLDEQIKDSTHEEDESATQIKSECEAKVAAKKIFQNVARHGSKYIYLEDLMRFMQEDEALKTMSLFEGASESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVVILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTIFLRYDNQKIVFPNSVLATKAIHNFYRSPDMGDAVEFCLHISTPPEKIAVMRQRIVSYIEAKKEHWCPAPMIVFKDVEELNRLRIAIWLTHRMNHQDMGERWTRRALLVEELLKIFQELDLQYRLLPLDINVRTLPPVNSTRLPATWTATTS 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2916034 2922748 - MC02g0328 Mch2g0398 681320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0398 942 MobiDBLite consensus disorder prediction 536 561 - -
Mch2g0398 942 MobiDBLite consensus disorder prediction 261 278 - -
Mch2g0398 942 FunFam Predicted mechanosensitive ion channel 766 815 - -
Mch2g0398 942 MobiDBLite consensus disorder prediction 257 288 - -
Mch2g0398 942 MobiDBLite consensus disorder prediction 191 226 - -
Mch2g0398 942 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 45 939 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Mch2g0398 942 MobiDBLite consensus disorder prediction 32 55 - -
Mch2g0398 942 Pfam Mechanosensitive ion channel, beta-domain 759 815 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch2g0398 942 PIRSF Memb_At2g17000 45 942 IPR016688 -
Mch2g0398 942 MobiDBLite consensus disorder prediction 161 233 - -
Mch2g0398 942 MobiDBLite consensus disorder prediction 17 58 - -
Mch2g0398 942 Coils Coil 496 519 - -
Mch2g0398 942 Gene3D - 766 815 IPR023408 -
Mch2g0398 942 SUPERFAMILY Sm-like ribonucleoproteins 756 815 IPR010920 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0398 Mch-Chr2:2916034 Mch6g0955 Mch-Chr6:6757565 1.36E-159 dispersed
Mch11g0085 Mch-Chr11:543000 Mch2g0398 Mch-Chr2:2916034 1.05E-231 transposed
Mch2g0398 Mch-Chr2:2916034 Mch4g0458 Mch-Chr4:2930402 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0398 K22048 - csv:101210264 1502.26