Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0398 ATGGATTTCTCCCTCAAGTCATTCAAATCCCACGGCTCCTACAAGTATGCGAGGAAGCTTTCTGGGGGTGGAGGAGCAGACGATAGTCAAGAACAGCTACCGATTCTTTCAGATCAGGACCCGGGTAATCTTCACCAGCAACAGTCCATGGCGGTGTCTGATGCTTCTGACCGGAACGAGGTCATCGTCAAGATCGATCAGCCCGACTCTTTGAATGCGACGTCAAGAGTAATGGAGGCGGTGAACGCCAGTGGGAGGATTTGGCGGGAGTCGAGCTACGATTTCTGGAATGATGGTGATGGTAGGCGAAGTAATGCTGAAGGTTCTAATGGCGATGGTAGGAGTGAGGATTTCGAGTTTAGGCAACATAGGCAGGGTGTGGAAGATCCGCCTTCGAAGCTTATTGGACAGTTTCTGCACAAACAGAAGGCGTCCGGGGAGATGTCCTTGGATATGGATATGGAAATGTTGGAACTACCGCAGGATAAGACGTTGCCTCCGGTGGCGGAGTCTCCGATGCGTCGGAGCTCGAAGGAGTTGAAGGTCTCGTTCGAGTCTATCTCAGAGATTTCTGAAAACGATTCGATGCGAAGACGGCATAGGGACTCGCCGGCCGATGAGGAGTATAAAGGACAGCAACCGCCGCAGCGCGATCGTCGAGCATACGGCAATGGTCACGATGACGGTGGTGCCGAGGTTGTGAGATGCACATCCAATTCATCTTTTCAGAGAGACGTATCATTCCAGAGAAAATCTAGCTTGCTTAGGGCTAAGACTAAGTCCAGATTGTTGGACCCGCCGGAGCAGCCGGACCGGAGGTCCGGCGTCCGGTCCGGCCGTGTACCCCCAAAATCAGGACAAATCCGCTCCGGATTGTTGTCAAAAGCCTTGGACGAGGAAGACGATGATCCATTCTTGGAAGAAGATCTACCAGATGAGTATAAGAAATCCAATCTTGGTGCTCTGACTCTGTTACAATGGGCGAGTTTGATTTTGATCATCGCTGCCTTGGTTTGCACTCTGTCAATTCCCTATTTGAACCGAAAGAATCTATGGAAGCTCAAATTATGGAAATGGGAGGTCATGGTTCTAGTTCTGATTTGCGGGAGGCTGGTTTCTGGGTGGGGGATTAGGATAATCGTGTTCTTCATCGAGAGAAACTTTCTACTGCGTAAACGGGTTCTATACTTTGTGTATGGGGTCAGAAAAGCAGTCCAGAATTGTCTTTGGTTGGGACTGGTTTTAATTGCTTGGAACTTTCTGTTTGATGACAAAGTTCAAAGAGAAGTCAAAAGCAATGCCCTAGAGTATGTGACCAAAGTTCTAGTATGTCTTCTGGTGAGCACCTTAGTTTGGTTGGTGAAGACCCTAATGGTGAAGGTGCTCGCCTCCTCTTTCCATGTGAGCACATATTTTGACAGGATTCAGGATGCTCTGTTTAACCAGTATGTAATCGAGACGCTGTCGGGGCCGCCATTGATAGAGATTCGAAAGAACGAGGAAGAAGAAGAGAGGCTTGCAGAAGAGGTTATGAAGTTGCAGAATGCAGGGGCCACCATTCCCCCTGATCTGAAGGCCACTGCCTTCTCCACTGCAAAGGGTGGGAGGGTGATTGGGAGTGGAGGGCTGCAGAGAAGCCCCCGCGGAAGAAGCGGCAAGCTCTCTCGGTCGCTGTCGAAGAATGGCGACGACGGTATAACCATTGATCATCTGCATAAGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGGCTGATGAACATTGTTCGACATGGGGCTCTTTCAACTTTGGACGAACAGATCAAGGATTCAACTCATGAGGAAGACGAGTCAGCAACACAGATAAAGAGTGAATGCGAGGCAAAAGTTGCTGCCAAGAAGATTTTTCAGAACGTGGCCAGGCATGGTTCCAAATACATCTACCTAGAGGACTTGATGCGTTTCATGCAAGAAGATGAAGCTTTAAAAACCATGAGTCTCTTCGAAGGAGCATCTGAGAGCAGGAAAATAAGCAAGTCATCCTTGAAAAACTGGGTGGTCAATGCCTTCAGAGAGCGGAGGGCCTTGGCTTTGACACTAAACGATACTAAAACAGCTGTGAATAAACTTCACCGTATGGTGAATATTTTAGTTTCTGTTGTTATCCTGGTTATTTGGTTACTGATTCTGGGTATAGCCACCAGCAAGTTTCTCCTATTTGTAACCTCTCAACTTGTGCTAGTGGCATTTGTATTTGGAAATACTTGCAAGACTGTTTTTGAAGCAATCATCTTCTTATTTGTGATGCATCCATTCGATGTTGGAGACCGGTGTGAAATCGATGGCGTCCAGATGATTGTAGAAGAAATGAATATTTTGACGACCATCTTTCTACGATACGACAACCAGAAGATCGTCTTTCCGAACAGCGTTCTTGCAACCAAGGCCATCCACAATTTCTACCGCAGTCCCGACATGGGAGACGCTGTTGAATTCTGTCTTCACATATCTACTCCGCCCGAAAAAATTGCTGTCATGAGACAGAGAATAGTAAGTTACATTGAGGCCAAGAAGGAGCACTGGTGCCCTGCACCAATGATTGTCTTCAAGGATGTGGAAGAGTTGAACAGGCTAAGAATAGCGATATGGCTTACTCATAGAATGAACCATCAAGACATGGGAGAGAGATGGACAAGGAGAGCTCTCTTGGTTGAAGAACTGCTTAAGATTTTCCAAGAGCTTGACCTTCAATACCGTCTTCTACCGCTCGATATTAATGTCCGTACCTTGCCTCCGGTGAACTCTACCAGGCTTCCAGCTACTTGGACAGCCACTACAAGTTGA 2829 47.44 MDFSLKSFKSHGSYKYARKLSGGGGADDSQEQLPILSDQDPGNLHQQQSMAVSDASDRNEVIVKIDQPDSLNATSRVMEAVNASGRIWRESSYDFWNDGDGRRSNAEGSNGDGRSEDFEFRQHRQGVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPQDKTLPPVAESPMRRSSKELKVSFESISEISENDSMRRRHRDSPADEEYKGQQPPQRDRRAYGNGHDDGGAEVVRCTSNSSFQRDVSFQRKSSLLRAKTKSRLLDPPEQPDRRSGVRSGRVPPKSGQIRSGLLSKALDEEDDDPFLEEDLPDEYKKSNLGALTLLQWASLILIIAALVCTLSIPYLNRKNLWKLKLWKWEVMVLVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSNALEYVTKVLVCLLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIRKNEEEEERLAEEVMKLQNAGATIPPDLKATAFSTAKGGRVIGSGGLQRSPRGRSGKLSRSLSKNGDDGITIDHLHKLSPKNVSAWNMKRLMNIVRHGALSTLDEQIKDSTHEEDESATQIKSECEAKVAAKKIFQNVARHGSKYIYLEDLMRFMQEDEALKTMSLFEGASESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVVILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTIFLRYDNQKIVFPNSVLATKAIHNFYRSPDMGDAVEFCLHISTPPEKIAVMRQRIVSYIEAKKEHWCPAPMIVFKDVEELNRLRIAIWLTHRMNHQDMGERWTRRALLVEELLKIFQELDLQYRLLPLDINVRTLPPVNSTRLPATWTATTS 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2916034 2922748 - MC02g0328 Mch2g0398 681320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0398 942 MobiDBLite consensus disorder prediction 536 561 - -
Mch2g0398 942 MobiDBLite consensus disorder prediction 261 278 - -
Mch2g0398 942 FunFam Predicted mechanosensitive ion channel 766 815 - -
Mch2g0398 942 MobiDBLite consensus disorder prediction 257 288 - -
Mch2g0398 942 MobiDBLite consensus disorder prediction 191 226 - -
Mch2g0398 942 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 45 939 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Mch2g0398 942 MobiDBLite consensus disorder prediction 32 55 - -
Mch2g0398 942 Pfam Mechanosensitive ion channel, beta-domain 759 815 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch2g0398 942 PIRSF Memb_At2g17000 45 942 IPR016688 -
Mch2g0398 942 MobiDBLite consensus disorder prediction 161 233 - -
Mch2g0398 942 MobiDBLite consensus disorder prediction 17 58 - -
Mch2g0398 942 Coils Coil 496 519 - -
Mch2g0398 942 Gene3D - 766 815 IPR023408 -
Mch2g0398 942 SUPERFAMILY Sm-like ribonucleoproteins 756 815 IPR010920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0398 K22048 - - csv:101210264 1502.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0398 Mch-Chr2:2916034 Mch6g0955 Mch-Chr6:6757565 1.36E-159 dispersed
Mch11g0085 Mch-Chr11:543000 Mch2g0398 Mch-Chr2:2916034 1.05E-231 transposed
Mch2g0398 Mch-Chr2:2916034 Mch4g0458 Mch-Chr4:2930402 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g0406 . 154 520 Mechanosensitive Ion Channel Family AT4G00290 65.0 3.3e-143 505.4
Mch8g0272 . 11 702 Mechanosensitive Ion Channel Family AT5G10490 57.3 9.7e-199 690.3
Mch10g0606 . 64 764 Mechanosensitive Ion Channel Family AT5G10490 55.1 1.0e-192 670.2
Mch8g0272 . 11 682 Mechanosensitive Ion Channel Family AT1G58200 57.5 8.6e-195 677.2
Mch10g0606 . 49 731 Mechanosensitive Ion Channel Family AT1G58200 50.7 1.1e-170 597.0
Mch2g0398 . 50 942 Mechanosensitive Ion Channel Family AT1G53470 56.0 4.6e-265 911.0
Mch4g0458 . 83 948 Mechanosensitive Ion Channel Family AT1G53470 50.7 3.5e-233 805.1
Mch2g0398 . 50 937 Mechanosensitive Ion Channel Family AT3G14810 53.7 1.5e-249 859.4
Mch2g0398 . 50 942 Mechanosensitive Ion Channel Family AT1G78610 60.0 1.9e-284 975.3
Mch4g0458 . 58 946 Mechanosensitive Ion Channel Family AT1G78610 55.9 6.0e-262 900.6
Mch11g0085 . 60 704 Mechanosensitive Ion Channel Family AT1G78610 50.3 1.8e-181 633.3
Mch2g0398 . 227 938 Mechanosensitive Ion Channel Family AT2G17000 61.3 5.0e-237 817.8
Mch4g0458 . 271 949 Mechanosensitive Ion Channel Family AT2G17000 56.9 9.6e-212 733.8
Mch11g0446 . 17 735 Mechanosensitive Ion Channel Family AT5G19520 51.7 3.1e-190 662.1
Mch11g0446 . 67 735 Mechanosensitive Ion Channel Family AT5G12080 58.3 6.4e-204 707.6
Mch6g0955 . 58 749 Mechanosensitive Ion Channel Family AT5G12080 52.3 2.1e-191 666.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67