Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0424 ATGGAGGCCGCGAATGACGCTTTGTCCACTACTAATACAATCAGTTTCTACACCACCATTAACTTTTTTTTCTCTCGGGAAAATGTCAAATTTTCCGGGAAAAAAGGTTTGTCTTTAAATCAATACCCCCACCCCCACTTCAGAATTCCAATCAAACTCCAAAGATTCGGAGAGTGGGTGGAGGGGAGGGGGGAAGGGAAAAAAGGAAAAAAAAGAAGAAAAAAAAAGGTGGGGATGGAGAGAGAATTTGGAGTGATTGGAAATAATGGTTGGAGTCGGTGTTCACCGGCATCGAGCGGCGGCCGGGATGAGGGTGACGAGGTGATTAAGGAATTGACGGAAGCGAATGAGTTAATCGCGGCCATTGGGGGGTTTTCTGGATTTCGGAAGACGCAGTCGAAGGAGTGTTTGAATTTGGTGAGGAGGTTGAAGATGCTGGTGCCGCTGTTGGAGGAGATAAGGGACCTTCATAATATGGTTCCCGCCGAGGCCTTGAGTCCCCATCTCGCTCATTTGAAAGAGGCTCTTGTATTGGCCAAAAGGTTACTGAAGAATTGCCACAATGGAAGCAAGATTTACCTGGCGTTTGAGAATGAGGCTGTGATGGCAAGGTTTCATGCTGTTTATGACAAATTGAAGGAGGCCCTTGATGGGATGCCTTATGATGAGCTTGGAGTCTCAGTTGAATTGCAAGAGCAAGTTGAGCTCATGTCCACGCAACTCAAAAGAGCAAAGTGTCGGAAAGATACACAAGACATGGAACTAGCAATGGACATGATGGTTGTATTTTCTAAAAATGATGAGAGAAATGCAGACCCTGTTATACTTGAAAGATTGGCAAATAAATTGGAACTACGTAAAATTGCAGATTTGGAAGCAGAAACTGAAGCTGTTCAAAAATTAGTTAAACGTAGTAGAGGTATGCCGAGTTCTGAAAGTCTCCAGCAAATTTTAGAACTTCTAGGCAAGTTTAAAGGAATTGCAGGTATGGACAATGATATTGCTCCTCATGGTCCTGTTTCATCGAAATGTCTTCGACGGTGTCGGTCTGCAGTAATCCCTCATGAATTCCTCTGTCCAATTACCCTTGAGATCATGACCGATCCAGTCATTGTGGCAACTGGGCAGACTTATGACCGAGAAAGTATACAGAAATGGTTGGATTCCAATCACAGGACCTGCCCGAAAACTGGACAAACTTTGGCGCATTTGTCAGTGGCACCAAATTATGCCCTCAAGAACCTCATTCTGCAGTGGTGCCAAAAGAACCACTATGAATTACCCAAAAAGGATGGTGGATTGGGTGACACTCCGCCCGAACTCGCTCGCGAAATCTCCTCTTTAGTCCATAATCTATCATCAAGTCAGTTGGATGTCCGGAAAGAGGCTATCATCAATATCCGGGTTCTCTCCAAAGAGAACCCAGAGAACAGAGTTTGGATAGCAAATAGCGGAGTCATCCCTCCATTGGTTAAGCTTCTCTCCTACCCAGATCTCAAATTCCAAGAACACACCGTAACTGCTCTATTGAACTTGTCCATTGACGACTCGAACAAAAGGCTCATAGCAAGAGAAGGAGCCATTCCTGCTATCATAGAAATACTGCAGCATGGAACAGAGGAGGCTAAGGAGAACTCTGCAGCTGCCTTGTTTAGCTTGTCAATGCTGGATGAAAACAAAGTTCTGATCGGAACTCTAAATGGAATCCCACCATTAGTAGATCTTCTCCGAGATGGGACAATCCGAGGAAAGAAGGACGCTGCCACTGCACTCTTCAACTTGTCACTAAACCAATCAAACAAGTCCCGGGCCATCAAAGGTGGTATCATACCACCACTGCTCCGTTTACTCGAGGATAAAAGCCTGGGAATGGTTGATGAAGCTTTATCAATCTTGTTACTCCTCACATCACATCCCGAAGGACGAGCCGAGCTCAGCCATAACTCTTTCATCGAAACTATAGTAAACATCATGAAAGATGGGACTCCGAAGAACAAAGAATGCGCTACATCGTTACTTCTAGAGCTGGGACTAAACAATTCACCTTCCATCTTGGTTGCACTGCAATATGGTGTGTATGAACATTTGATAGAGCTCACAAGAAGTGGGACAAGTAGAGCCCAGAGAAAAGCAAACTCACTTTTGCAGTATATGAGCAAGTGTGAACACATTCCCTAA 2178 44.67 MEAANDALSTTNTISFYTTINFFFSRENVKFSGKKGLSLNQYPHPHFRIPIKLQRFGEWVEGRGEGKKGKKRRKKKVGMEREFGVIGNNGWSRCSPASSGGRDEGDEVIKELTEANELIAAIGGFSGFRKTQSKECLNLVRRLKMLVPLLEEIRDLHNMVPAEALSPHLAHLKEALVLAKRLLKNCHNGSKIYLAFENEAVMARFHAVYDKLKEALDGMPYDELGVSVELQEQVELMSTQLKRAKCRKDTQDMELAMDMMVVFSKNDERNADPVILERLANKLELRKIADLEAETEAVQKLVKRSRGMPSSESLQQILELLGKFKGIAGMDNDIAPHGPVSSKCLRRCRSAVIPHEFLCPITLEIMTDPVIVATGQTYDRESIQKWLDSNHRTCPKTGQTLAHLSVAPNYALKNLILQWCQKNHYELPKKDGGLGDTPPELAREISSLVHNLSSSQLDVRKEAIINIRVLSKENPENRVWIANSGVIPPLVKLLSYPDLKFQEHTVTALLNLSIDDSNKRLIAREGAIPAIIEILQHGTEEAKENSAAALFSLSMLDENKVLIGTLNGIPPLVDLLRDGTIRGKKDAATALFNLSLNQSNKSRAIKGGIIPPLLRLLEDKSLGMVDEALSILLLLTSHPEGRAELSHNSFIETIVNIMKDGTPKNKECATSLLLELGLNNSPSILVALQYGVYEHLIELTRSGTSRAQRKANSLLQYMSKCEHIP 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3103831 3107981 + MC02g0353 Mch2g0424 681346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0424 725 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 526 568 IPR000225 GO:0005515(InterPro)
Mch2g0424 725 PANTHER U BOX DOMAIN-CONTAINING 130 720 - -
Mch2g0424 725 ProSiteProfiles U-box domain profile. 352 426 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch2g0424 725 SMART arm_5 515 555 IPR000225 GO:0005515(InterPro)
Mch2g0424 725 SMART arm_5 474 514 IPR000225 GO:0005515(InterPro)
Mch2g0424 725 SMART arm_5 597 637 IPR000225 GO:0005515(InterPro)
Mch2g0424 725 SMART arm_5 556 596 IPR000225 GO:0005515(InterPro)
Mch2g0424 725 SMART arm_5 680 720 IPR000225 GO:0005515(InterPro)
Mch2g0424 725 Coils Coil 227 247 - -
Mch2g0424 725 Gene3D - 109 220 IPR036537 GO:0007166(InterPro)
Mch2g0424 725 Gene3D - 585 724 IPR011989 -
Mch2g0424 725 FunFam RING-type E3 ubiquitin transferase 435 724 - -
Mch2g0424 725 SUPERFAMILY RING/U-box 353 427 - -
Mch2g0424 725 CDD MLKL_NTD 134 244 - -
Mch2g0424 725 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 353 427 IPR013083 -
Mch2g0424 725 FunFam RING-type E3 ubiquitin transferase 107 222 - -
Mch2g0424 725 Pfam U-box domain 353 423 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch2g0424 725 SUPERFAMILY ARM repeat 445 719 IPR016024 -
Mch2g0424 725 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 567 609 IPR000225 GO:0005515(InterPro)
Mch2g0424 725 SMART Ubox_2 356 419 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch2g0424 725 Pfam Armadillo/beta-catenin-like repeat 516 554 IPR000225 GO:0005515(InterPro)
Mch2g0424 725 Pfam Armadillo/beta-catenin-like repeat 474 513 IPR000225 GO:0005515(InterPro)
Mch2g0424 725 Pfam Armadillo/beta-catenin-like repeat 557 595 IPR000225 GO:0005515(InterPro)
Mch2g0424 725 FunFam RING-type E3 ubiquitin transferase 352 427 - -
Mch2g0424 725 Gene3D - 439 584 IPR011989 -
Mch2g0424 725 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 485 527 IPR000225 GO:0005515(InterPro)
Mch2g0424 725 CDD RING-Ubox_PUB 354 406 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0424 Mch-Chr2:3103831 Mch3g0294 Mch-Chr3:4172226 1.77E-90 dispersed
Mch2g0424 Mch-Chr2:3103831 Mch3g1460 Mch-Chr3:16894727 1.69E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0424 - - - 0.0