Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch2g0443 | ATGGAGAACAACCGAGACGTCGGCAATAGTGAGCCTGCAGACAAATGGATGGCATTTGACAGAAAATCAAATGAAGCAGGAGAAGACAGAAAAAATTCGCAATCTTCTTCCAAAAGGGCGGTAACAACAGAAGCAATTATAGCAGAAAGGGCGGCGGAATGGGGACTGGTGGTGGAGACAGACGTGGAGGAAGGCAGTTTCAAGGCCATTGTGGGGAGAGCATCAGGGGAGGGAGGCGGCAGCAAAAGGTCATCGGAGAAAATCAGTGACTCAGGAAGAACGTCTAGCTTTAGCAAAGAAACCTCGGGAGTTTTTCCGAGGGTATCACAAGAGTTGAAGGATGCTTTGGCTTCTTTGGAACAGACATTCGTTGTCTCTGATGCCACTAAACCGGAGTGCCCCATCGTTTATGCGAGCAGTGGGTTTTTTGGCATGACTGGTTATGCGTCTGAGGAAGTCATTGGAAGGAACTGTCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGACAAAATTCGATATGCAGTGAAAAACGGCAAAAGCTACTGCGGGAGGCTCTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAGTCACGCCTATCAAGGATGACAACGGCAATACCATTAAATTTATTGGAATGCAGGTAGAAGTAAGCAAGTTCACAGAAGGTATCAATGAGAGAGCATTACGACCAAATGGGTTGCCTAAGTCATTAATCCGCTATGATGCTCGCCAGAAGGAAAAGGCATTGGTTTCCATCACAGAGGTTGTTCAAACTGTGAAGAATCCTCGATCTCATAGTCGAGCTGTGAGTCACGACAGTACCAGGAATAAAGAATACTTAGAGAAGTTTAATCTTGACCATATTCTTCCAAAGTCAGTTGAAGCTGCAAATGATACACCTGGTAGACAAACTCCTCAACAGGATCCCAGAGATGATGGCTTAGGCAAGAAACCTAGGTTATCGAGTCGCGTTTCTTTAATGGGGTTTAAAGGGAGATCTATGAGCAGTTCAAGGAAGCTTGAAGAGACAATAACCTTTGAACCGGAAATTTTGATGACTGATGAAATAGAGCGGTCTGATAGTTGGGACCGTTCTGAAATGGACAGAGATGTTCGCCAAGGAATTGATTTAGCTACCACATTGGAACGCATTGAGAAAAATTTTGTCATTACTGATCCAAGACTTCCTGACAATCCAATTATATTTGCATCCGACAGCTTTCTTGAATTGACAGAATATACACGTGAAGAAATTTTGGGACGGAACTGCCGGTTTCTCCAAGGACCTGAAACAGATCAAGAAACTGTCTCAAAGATAAGAGATGCAATCAGGGAGCAAAGAGAAATAACTGTTCAGTTGATCAACTATACCAAGACTGGTAAGAAGTTCTGGAATTTATTCCACTTGCAACCGATGCGTGATGAAACGGGAGAGCTTCAGTACTTTATTGGTGTACAGCTAGATGGAAGTGGCCATGTGGAACCTTTGCAAAACCGCCTTTCTGAGACAGCAGAACAACAAAGTGCCATGCTGGTTAAAGCCACTGCAGAGAATGTCGATGAGGCTGTTCGTGAACTTCCCGATGCCAACTTGAGACCAGAAGATTTATGGGCAATTCATTCTCAACCAGTCTTCCCAAGGCCTCACAAGAAGCATAATCCTTCTTGGACTGCTATACAAAAGATTATTCGACGTGGTGAAAAAATTGGACTTCAACATTTCAAACCAATTAAACCACTGGGTTGTGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTACAGACGAACTTTATGCCTTGAAAGCAATGGAGAAATCAGCACTCTTGAATCGAAACAAGGTCCACAGAGCATGCATGGAAAGGCAAATCATTGCGCTTCTGGATCATCCTTTTCTTCCAACACTATACACTTCATTTGAGACCCCTACACACGTTTGTTTGATAACAGACTTTTTCCCTGGTGGGGAGTTATTTGCATTGCTTGATAAGCAGCCAATGAAAATGTTTAAAGAGGATTCTGCAAGGTTCTATGCTGCAGAGGTCGTCATTGGCTTGGAATATCTTCACTGTCTAGGAATCATTTATCGGGATCTGAAGCCCGAAAATATTCTTCTCCAAAAGGACGGACATGTTATTCTTGCTGACTTCGATTTATCACTTATGACATCCTGCAAACCACAGATTGTGAAGTACCCAGTGACTAACAAGAGAAGGAGATCTCGAAGTCAACCGCCCCCAGTATTTGTTGCGGAGCCAGTCACACAATCAAATTCATTTGTTGGAACTGAAGAGTATATTGCTCCTGAAATTATAACAGGCGAGGGCCACAGCAGCTCTATTGATTGGTGGGCTCTAGGTATATTGTTGTATGAGATGCTTTACGGTCGCACACCTTTCAGGGGAAAGAATAGGCAGAAAACTTTCGGTAACATCTTGCACAAAGATCTCACCTTCCCGAGTAGCATTCCGGTAAGTCTTGCTGCAAGGCAGTTGATCAATGCATTGCTACAAAGAGACCCCGCCCGACGTTTAGGATCAAGTACAGGTGCAAACGAAATCAAAGAGCACCCATTTTTCCAATCAATCAACTGGCCGCTGATCCGATGTATGGTCCCACCACCATTAGAATCACCTCTTCACCTGACTGGGAAAGATGAAAAGGCCAAGGTCGTAAACTGGGAAGATGATGGGGTGCTTAGTCCAATGGATATGGATTTTTTCTGA | 2754 | 44.08 | MENNRDVGNSEPADKWMAFDRKSNEAGEDRKNSQSSSKRAVTTEAIIAERAAEWGLVVETDVEEGSFKAIVGRASGEGGGSKRSSEKISDSGRTSSFSKETSGVFPRVSQELKDALASLEQTFVVSDATKPECPIVYASSGFFGMTGYASEEVIGRNCRFLQGPETDQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGMQVEVSKFTEGINERALRPNGLPKSLIRYDARQKEKALVSITEVVQTVKNPRSHSRAVSHDSTRNKEYLEKFNLDHILPKSVEAANDTPGRQTPQQDPRDDGLGKKPRLSSRVSLMGFKGRSMSSSRKLEETITFEPEILMTDEIERSDSWDRSEMDRDVRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETVSKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSGHVEPLQNRLSETAEQQSAMLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKKHNPSWTAIQKIIRRGEKIGLQHFKPIKPLGCGDTGSVHLVELLGTDELYALKAMEKSALLNRNKVHRACMERQIIALLDHPFLPTLYTSFETPTHVCLITDFFPGGELFALLDKQPMKMFKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVILADFDLSLMTSCKPQIVKYPVTNKRRRSRSQPPPVFVAEPVTQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIPVSLAARQLINALLQRDPARRLGSSTGANEIKEHPFFQSINWPLIRCMVPPPLESPLHLTGKDEKAKVVNWEDDGVLSPMDMDFF | 917 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3222422 | 3237371 | - | MC02g0370 | Mch2g0443 | 681365 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch2g0443 | 917 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 703 | 715 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch2g0443 | 917 | CDD | PAS | 135 | 224 | IPR000014 | - | |
Mch2g0443 | 917 | FunFam | Putative LOV domain-containing protein | 666 | 881 | - | - | |
Mch2g0443 | 917 | MobiDBLite | consensus disorder prediction | 72 | 102 | - | - | |
Mch2g0443 | 917 | FunFam | Putative LOV domain-containing protein | 122 | 278 | - | - | |
Mch2g0443 | 917 | FunFam | LOV domain-containing protein | 370 | 534 | - | - | |
Mch2g0443 | 917 | ProSiteProfiles | PAC domain profile. | 182 | 236 | IPR000700 | - | |
Mch2g0443 | 917 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 397 | 496 | IPR035965 | - | |
Mch2g0443 | 917 | CDD | PAS | 396 | 496 | IPR000014 | - | |
Mch2g0443 | 917 | Pfam | PAS domain | 404 | 496 | IPR000014 | - | |
Mch2g0443 | 917 | Pfam | PAS domain | 129 | 225 | IPR000014 | - | |
Mch2g0443 | 917 | Gene3D | Phosphorylase Kinase; domain 1 | 581 | 665 | - | - | |
Mch2g0443 | 917 | SMART | serkin_6 | 582 | 869 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch2g0443 | 917 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Mch2g0443 | 917 | ProSiteProfiles | Protein kinase domain profile. | 582 | 869 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch2g0443 | 917 | Gene3D | PAS domain | 122 | 292 | - | - | |
Mch2g0443 | 917 | SMART | pas_2 | 110 | 179 | IPR000014 | - | |
Mch2g0443 | 917 | SMART | pas_2 | 383 | 452 | IPR000014 | - | |
Mch2g0443 | 917 | PANTHER | FLIPPASE KINASE 1-RELATED | 529 | 888 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Mch2g0443 | 917 | SMART | pac_2 | 458 | 500 | IPR001610 | - | |
Mch2g0443 | 917 | SMART | pac_2 | 185 | 227 | IPR001610 | - | |
Mch2g0443 | 917 | NCBIfam | PAS domain S-box protein | 406 | 496 | IPR000014 | - | |
Mch2g0443 | 917 | NCBIfam | PAS domain S-box protein | 134 | 225 | IPR000014 | - | |
Mch2g0443 | 917 | ProSitePatterns | Protein kinases ATP-binding region signature. | 588 | 611 | IPR017441 | GO:0005524(InterPro) | |
Mch2g0443 | 917 | CDD | STKc_phototropin_like | 580 | 888 | - | - | |
Mch2g0443 | 917 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Mch2g0443 | 917 | ProSiteProfiles | PAC domain profile. | 455 | 509 | IPR000700 | - | |
Mch2g0443 | 917 | MobiDBLite | consensus disorder prediction | 302 | 327 | - | - | |
Mch2g0443 | 917 | ProSiteProfiles | PAS repeat profile. | 381 | 454 | IPR000014 | - | |
Mch2g0443 | 917 | SUPERFAMILY | Protein kinase-like (PK-like) | 559 | 891 | IPR011009 | - | |
Mch2g0443 | 917 | Gene3D | PAS domain | 370 | 534 | - | - | |
Mch2g0443 | 917 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 129 | 221 | IPR035965 | - | |
Mch2g0443 | 917 | Pfam | Protein kinase domain | 585 | 869 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch2g0443 | 917 | Gene3D | Transferase(Phosphotransferase) domain 1 | 666 | 885 | - | - | |
Mch2g0443 | 917 | ProSiteProfiles | PAS repeat profile. | 108 | 181 | IPR000014 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0443 | Mch-Chr2:3222422 | Mch8g1468 | Mch-Chr8:10997803 | 6.76E-109 | dispersed | |
Mch2g0963 | Mch-Chr2:6476122 | Mch2g0443 | Mch-Chr2:3222422 | 0 | transposed | |
Mch8g2644 | Mch-Chr8:29720928 | Mch2g0443 | Mch-Chr2:3222422 | 2.18E-19 | transposed | |
Mch9g2166 | Mch-Chr9:22343342 | Mch2g0443 | Mch-Chr2:3222422 | 2.91E-25 | transposed | |
Mch1g1680 | Mch-Chr1:17579827 | Mch2g0443 | Mch-Chr2:3222422 | 4.80E-106 | wgd | |
Mch2g0443 | Mch-Chr2:3222422 | Mch3g0725 | Mch-Chr3:11538666 | 1.05E-106 | wgd | |
Mch2g0443 | Mch-Chr2:3222422 | Mch4g0368 | Mch-Chr4:2323977 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77193 | PF00069 | Pkinase | 3.60E-60 | CL0016 | Mch | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch2g0443 | K20715 | - | csv:101215355 | 1647.1 |