Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0443 ATGGAGAACAACCGAGACGTCGGCAATAGTGAGCCTGCAGACAAATGGATGGCATTTGACAGAAAATCAAATGAAGCAGGAGAAGACAGAAAAAATTCGCAATCTTCTTCCAAAAGGGCGGTAACAACAGAAGCAATTATAGCAGAAAGGGCGGCGGAATGGGGACTGGTGGTGGAGACAGACGTGGAGGAAGGCAGTTTCAAGGCCATTGTGGGGAGAGCATCAGGGGAGGGAGGCGGCAGCAAAAGGTCATCGGAGAAAATCAGTGACTCAGGAAGAACGTCTAGCTTTAGCAAAGAAACCTCGGGAGTTTTTCCGAGGGTATCACAAGAGTTGAAGGATGCTTTGGCTTCTTTGGAACAGACATTCGTTGTCTCTGATGCCACTAAACCGGAGTGCCCCATCGTTTATGCGAGCAGTGGGTTTTTTGGCATGACTGGTTATGCGTCTGAGGAAGTCATTGGAAGGAACTGTCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGACAAAATTCGATATGCAGTGAAAAACGGCAAAAGCTACTGCGGGAGGCTCTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAGTCACGCCTATCAAGGATGACAACGGCAATACCATTAAATTTATTGGAATGCAGGTAGAAGTAAGCAAGTTCACAGAAGGTATCAATGAGAGAGCATTACGACCAAATGGGTTGCCTAAGTCATTAATCCGCTATGATGCTCGCCAGAAGGAAAAGGCATTGGTTTCCATCACAGAGGTTGTTCAAACTGTGAAGAATCCTCGATCTCATAGTCGAGCTGTGAGTCACGACAGTACCAGGAATAAAGAATACTTAGAGAAGTTTAATCTTGACCATATTCTTCCAAAGTCAGTTGAAGCTGCAAATGATACACCTGGTAGACAAACTCCTCAACAGGATCCCAGAGATGATGGCTTAGGCAAGAAACCTAGGTTATCGAGTCGCGTTTCTTTAATGGGGTTTAAAGGGAGATCTATGAGCAGTTCAAGGAAGCTTGAAGAGACAATAACCTTTGAACCGGAAATTTTGATGACTGATGAAATAGAGCGGTCTGATAGTTGGGACCGTTCTGAAATGGACAGAGATGTTCGCCAAGGAATTGATTTAGCTACCACATTGGAACGCATTGAGAAAAATTTTGTCATTACTGATCCAAGACTTCCTGACAATCCAATTATATTTGCATCCGACAGCTTTCTTGAATTGACAGAATATACACGTGAAGAAATTTTGGGACGGAACTGCCGGTTTCTCCAAGGACCTGAAACAGATCAAGAAACTGTCTCAAAGATAAGAGATGCAATCAGGGAGCAAAGAGAAATAACTGTTCAGTTGATCAACTATACCAAGACTGGTAAGAAGTTCTGGAATTTATTCCACTTGCAACCGATGCGTGATGAAACGGGAGAGCTTCAGTACTTTATTGGTGTACAGCTAGATGGAAGTGGCCATGTGGAACCTTTGCAAAACCGCCTTTCTGAGACAGCAGAACAACAAAGTGCCATGCTGGTTAAAGCCACTGCAGAGAATGTCGATGAGGCTGTTCGTGAACTTCCCGATGCCAACTTGAGACCAGAAGATTTATGGGCAATTCATTCTCAACCAGTCTTCCCAAGGCCTCACAAGAAGCATAATCCTTCTTGGACTGCTATACAAAAGATTATTCGACGTGGTGAAAAAATTGGACTTCAACATTTCAAACCAATTAAACCACTGGGTTGTGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTACAGACGAACTTTATGCCTTGAAAGCAATGGAGAAATCAGCACTCTTGAATCGAAACAAGGTCCACAGAGCATGCATGGAAAGGCAAATCATTGCGCTTCTGGATCATCCTTTTCTTCCAACACTATACACTTCATTTGAGACCCCTACACACGTTTGTTTGATAACAGACTTTTTCCCTGGTGGGGAGTTATTTGCATTGCTTGATAAGCAGCCAATGAAAATGTTTAAAGAGGATTCTGCAAGGTTCTATGCTGCAGAGGTCGTCATTGGCTTGGAATATCTTCACTGTCTAGGAATCATTTATCGGGATCTGAAGCCCGAAAATATTCTTCTCCAAAAGGACGGACATGTTATTCTTGCTGACTTCGATTTATCACTTATGACATCCTGCAAACCACAGATTGTGAAGTACCCAGTGACTAACAAGAGAAGGAGATCTCGAAGTCAACCGCCCCCAGTATTTGTTGCGGAGCCAGTCACACAATCAAATTCATTTGTTGGAACTGAAGAGTATATTGCTCCTGAAATTATAACAGGCGAGGGCCACAGCAGCTCTATTGATTGGTGGGCTCTAGGTATATTGTTGTATGAGATGCTTTACGGTCGCACACCTTTCAGGGGAAAGAATAGGCAGAAAACTTTCGGTAACATCTTGCACAAAGATCTCACCTTCCCGAGTAGCATTCCGGTAAGTCTTGCTGCAAGGCAGTTGATCAATGCATTGCTACAAAGAGACCCCGCCCGACGTTTAGGATCAAGTACAGGTGCAAACGAAATCAAAGAGCACCCATTTTTCCAATCAATCAACTGGCCGCTGATCCGATGTATGGTCCCACCACCATTAGAATCACCTCTTCACCTGACTGGGAAAGATGAAAAGGCCAAGGTCGTAAACTGGGAAGATGATGGGGTGCTTAGTCCAATGGATATGGATTTTTTCTGA 2754 44.08 MENNRDVGNSEPADKWMAFDRKSNEAGEDRKNSQSSSKRAVTTEAIIAERAAEWGLVVETDVEEGSFKAIVGRASGEGGGSKRSSEKISDSGRTSSFSKETSGVFPRVSQELKDALASLEQTFVVSDATKPECPIVYASSGFFGMTGYASEEVIGRNCRFLQGPETDQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGMQVEVSKFTEGINERALRPNGLPKSLIRYDARQKEKALVSITEVVQTVKNPRSHSRAVSHDSTRNKEYLEKFNLDHILPKSVEAANDTPGRQTPQQDPRDDGLGKKPRLSSRVSLMGFKGRSMSSSRKLEETITFEPEILMTDEIERSDSWDRSEMDRDVRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETVSKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSGHVEPLQNRLSETAEQQSAMLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKKHNPSWTAIQKIIRRGEKIGLQHFKPIKPLGCGDTGSVHLVELLGTDELYALKAMEKSALLNRNKVHRACMERQIIALLDHPFLPTLYTSFETPTHVCLITDFFPGGELFALLDKQPMKMFKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVILADFDLSLMTSCKPQIVKYPVTNKRRRSRSQPPPVFVAEPVTQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIPVSLAARQLINALLQRDPARRLGSSTGANEIKEHPFFQSINWPLIRCMVPPPLESPLHLTGKDEKAKVVNWEDDGVLSPMDMDFF 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3222422 3237371 - MC02g0370 Mch2g0443 681365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0443 917 ProSitePatterns Serine/Threonine protein kinases active-site signature. 703 715 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch2g0443 917 CDD PAS 135 224 IPR000014 -
Mch2g0443 917 FunFam Putative LOV domain-containing protein 666 881 - -
Mch2g0443 917 MobiDBLite consensus disorder prediction 72 102 - -
Mch2g0443 917 FunFam Putative LOV domain-containing protein 122 278 - -
Mch2g0443 917 FunFam LOV domain-containing protein 370 534 - -
Mch2g0443 917 ProSiteProfiles PAC domain profile. 182 236 IPR000700 -
Mch2g0443 917 SUPERFAMILY PYP-like sensor domain (PAS domain) 397 496 IPR035965 -
Mch2g0443 917 CDD PAS 396 496 IPR000014 -
Mch2g0443 917 Pfam PAS domain 404 496 IPR000014 -
Mch2g0443 917 Pfam PAS domain 129 225 IPR000014 -
Mch2g0443 917 Gene3D Phosphorylase Kinase; domain 1 581 665 - -
Mch2g0443 917 SMART serkin_6 582 869 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch2g0443 917 MobiDBLite consensus disorder prediction 1 41 - -
Mch2g0443 917 ProSiteProfiles Protein kinase domain profile. 582 869 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch2g0443 917 Gene3D PAS domain 122 292 - -
Mch2g0443 917 SMART pas_2 110 179 IPR000014 -
Mch2g0443 917 SMART pas_2 383 452 IPR000014 -
Mch2g0443 917 PANTHER FLIPPASE KINASE 1-RELATED 529 888 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Mch2g0443 917 SMART pac_2 458 500 IPR001610 -
Mch2g0443 917 SMART pac_2 185 227 IPR001610 -
Mch2g0443 917 NCBIfam PAS domain S-box protein 406 496 IPR000014 -
Mch2g0443 917 NCBIfam PAS domain S-box protein 134 225 IPR000014 -
Mch2g0443 917 ProSitePatterns Protein kinases ATP-binding region signature. 588 611 IPR017441 GO:0005524(InterPro)
Mch2g0443 917 CDD STKc_phototropin_like 580 888 - -
Mch2g0443 917 MobiDBLite consensus disorder prediction 1 35 - -
Mch2g0443 917 ProSiteProfiles PAC domain profile. 455 509 IPR000700 -
Mch2g0443 917 MobiDBLite consensus disorder prediction 302 327 - -
Mch2g0443 917 ProSiteProfiles PAS repeat profile. 381 454 IPR000014 -
Mch2g0443 917 SUPERFAMILY Protein kinase-like (PK-like) 559 891 IPR011009 -
Mch2g0443 917 Gene3D PAS domain 370 534 - -
Mch2g0443 917 SUPERFAMILY PYP-like sensor domain (PAS domain) 129 221 IPR035965 -
Mch2g0443 917 Pfam Protein kinase domain 585 869 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch2g0443 917 Gene3D Transferase(Phosphotransferase) domain 1 666 885 - -
Mch2g0443 917 ProSiteProfiles PAS repeat profile. 108 181 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0443 Mch-Chr2:3222422 Mch8g1468 Mch-Chr8:10997803 6.76E-109 dispersed
Mch2g0963 Mch-Chr2:6476122 Mch2g0443 Mch-Chr2:3222422 0 transposed
Mch8g2644 Mch-Chr8:29720928 Mch2g0443 Mch-Chr2:3222422 2.18E-19 transposed
Mch9g2166 Mch-Chr9:22343342 Mch2g0443 Mch-Chr2:3222422 2.91E-25 transposed
Mch1g1680 Mch-Chr1:17579827 Mch2g0443 Mch-Chr2:3222422 4.80E-106 wgd
Mch2g0443 Mch-Chr2:3222422 Mch3g0725 Mch-Chr3:11538666 1.05E-106 wgd
Mch2g0443 Mch-Chr2:3222422 Mch4g0368 Mch-Chr4:2323977 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77193 PF00069 Pkinase 3.60E-60 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0443 K20715 - csv:101215355 1647.1