Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0453 ATGGATCGGCTCGGGAGTAACGACAACAAACAAAGCGTTGAAAGGCATTCCCATGTCGAGATGGGATCATTAGGCGAGAAAACCATACTGGAATTTGAGGATGAGAGCCTCGTTAGTCCTGTATCATTAAATAGAAAGAATTTTGCTTTTGAGGCATCTATGCACGGTTCTCCATCATCTGGTGATTCGCAGAAATTTTGTTATGGTAACATGAAGAACAGAATTATTGACAGCATTAAGATTGTTGTCTTCTCTGCTAAAATCAATCTTCTCATGCCTTTCGGCCCTTTAGCAATATTAGTCAGCAGTCTTTCTGGTCACCATGGGTGGGTCTTCCTTTTAAGCTTACTGGGGATCATACCTCTTGCTGAGCGTCTGGGTTATGCAACGGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATATCAATATATGCATTGCGAAGTGGAATGATACGTGTCGTTCAACAGTCATTATTAGGTTCAATTTTGTCAAATATGTTATTAGTACTTGGATGTGCCTTCTTTGCTGGTGGAGTTGTGGTTTCTAAGAGGGAGCAGGTCTTCAGTAAGGGATCTGCTACAGTGAATTCTGGATTGCTGTTGATGGCAGTAATGGGACTTCTATTTCCTGCTGTCCTGCATTCCACACATACAGAGTTGCACTTTGGAAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCGGCATTATGTTGGTGGCATATGCTGCCTATCTTGTTTTTCAGTTGAAAAGCGAAAAGAACTTATATCACCCGGTTGATGTGGTCGATGAGGTGGAGACTGAAGAGAATTCTGATGATGAAGAATCTCCTGAGATATCTATGTGGGAATCCATTATTTGGCTGTCTATCTTGACCATTTGGATATCCGTCCTTTCTGAATATTTAGTAAATGCAATAGAGGGGGCATCGGTTGCCATGGACATACCAGTAGCATTCATTAGTGTAATCCTACTACCAATTGTTGGGAATGCTGCAGAGCATGCGGGTGCCATCATGTTTGCCATGAAAGACAAGCTTGACATTTCTTTGGGAGTCGCAATAGGATCATCTACGCAGATATCTATGTTCGGGATTCCTTTTTGTGTGGTCATTGGTTGGATGATGGGAGTCCCTATGGACTTGAATTTTCAACTCTTCGAGACCGCCACGCTTTTCATCACTGTTATAGTTGTCGCCTTCATGTTGCAGGATGGAACTTCTAATTACCTCAAAGGACTGATGCTTATTCTCTGCTACCTGATAGTAGCTGCAAGTTTCTTTGTACATATTGATCCAGCTTCAGTTGAAGATAAAAAATCCGGTGCATGA 1377 42.05 MDRLGSNDNKQSVERHSHVEMGSLGEKTILEFEDESLVSPVSLNRKNFAFEASMHGSPSSGDSQKFCYGNMKNRIIDSIKIVVFSAKINLLMPFGPLAILVSSLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRSGMIRVVQQSLLGSILSNMLLVLGCAFFAGGVVVSKREQVFSKGSATVNSGLLLMAVMGLLFPAVLHSTHTELHFGKSELALSRFSSGIMLVAYAAYLVFQLKSEKNLYHPVDVVDEVETEENSDDEESPEISMWESIIWLSILTIWISVLSEYLVNAIEGASVAMDIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWMMGVPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPASVEDKKSGA 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3304559 3311121 - MC02g0379 Mch2g0453 681375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0453 458 Gene3D - 138 280 IPR044880 -
Mch2g0453 458 Gene3D - 287 444 IPR044880 -
Mch2g0453 458 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 53 448 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Mch2g0453 458 Pfam Sodium/calcium exchanger protein 109 265 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch2g0453 458 Pfam Sodium/calcium exchanger protein 300 442 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch2g0453 458 FunFam Vacuolar cation/proton exchanger 139 278 - -
Mch2g0453 458 FunFam Vacuolar cation/proton exchanger 288 444 - -
Mch2g0453 458 NCBIfam calcium/proton exchanger 92 443 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1417 Mch-Chr10:13332115 Mch2g0453 Mch-Chr2:3304559 7.70E-208 dispersed
Mch2g0453 Mch-Chr2:3304559 Mch8g1017 Mch-Chr8:7198468 2.12E-196 dispersed
Mch2g0453 Mch-Chr2:3304559 Mch1g0613 Mch-Chr1:10320444 2.86E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0453 K07300 - csv:101215915 762.681