Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0456 ATGTCAATTGTAAACATGGGTTTCATGTGTGATTTTTGTGGGGATCAAAGGTCGATGGTTTACTGCCGATCTGATGCTGCTTGTTTGTGCTTATCGTGTGACCGAAATGTCCATTCGGCGAATGCCTTGTCGAGGCGCCACTCTAGAACGCTGTTATGTGAAAGATGCCATTTGCAACCTGCAGCGGTGAGATGTACTGAAGAGAGGATTTCTCTGTGTCAAAATTGTGACTGGACAGTTCATGGCACGTCTACCTCTGCTTCATCATCACACAAGAGGCAAACCATCAATTGTTACTCTGGCTGTCCATCGGCTGCAGAACTTTCTTCCATCTGGTCCTTTGTTTTGGATGTACCCTCTGTAAATGATGCTTGTGAGCAAGAGTTGGGATTAATGAGCATTGCTGAGACTGACTTGACCGGTGCCTGGAGCCCTTCAGAAAACAACGCAAGTCAAAGAATGCCTGGCTCAGCTAAATCTAGTGATGTTTGCAGCAGGGAAAAGTCAAATGTTTGGGTTGGATCATCTTCACTAACTGACTTTGGCTCTAAGCTTCACACTTCAGATCAGCCAGATGAATTGGCTAATGTGGCTTTACCCAAGGATTTTTTCAAGCATCACATTTTTGGTATGCAGTTTTGCTGTCCTGGAACAAAAGTTGCTGGACTCTGCAGCGAAGATGATGACATCTACAAGGAATTTGATATGGATGAAATGGATTTGAGTCTTGAAAACTATGAGGAATTATTTGGTGTAGGCTCTAATAATCCTGAAGAACTTTTTGAGAACTGTGGAATCGACAACCTTTTTGAGGCAAAAGACGTGTCTTTCGAAGATTCAATATGCCATGGCTCAGTTGCTGCAGAGGGGTCTTCCGTTGGAGTGGTTAAACCGATGCAGCCAGCCTATAGCAATGGTGCATCTGCCGATTCGATCATGAGTACTAAAACCGAACCGATTCTTTGTTTCAACACAAGGCAAGCACAATCGGGTCTGTCATTTTCTGGCCTCACTGGCGAGAGCAGTGCTGGTGATTATCAAGACTGTGGAGCCTCTTCAATGCTTCTAATGGGAGAGCCTCCATGGTGTGCCCCTGGCACTGAAAGTTCTTTCCCATCGTCTGATCGTAACAATGCCGTTCTGCGTTATAAGGAGAAAAAGAAGGCGCGCAAGTTTGAGAAAAGAGTGAGGTACGCCACCCGCAAGGCAAGAGCCGACGTGAGAAGGCGTGTGAAGGGACGGTTTGTGAAAGCCGGAGAGGCATACGATTACGACCCACTGAACCAGACTAGAAGCTGCTGA 1302 46.08 MSIVNMGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCHLQPAAVRCTEERISLCQNCDWTVHGTSTSASSSHKRQTINCYSGCPSAAELSSIWSFVLDVPSVNDACEQELGLMSIAETDLTGAWSPSENNASQRMPGSAKSSDVCSREKSNVWVGSSSLTDFGSKLHTSDQPDELANVALPKDFFKHHIFGMQFCCPGTKVAGLCSEDDDIYKEFDMDEMDLSLENYEELFGVGSNNPEELFENCGIDNLFEAKDVSFEDSICHGSVAAEGSSVGVVKPMQPAYSNGASADSIMSTKTEPILCFNTRQAQSGLSFSGLTGESSAGDYQDCGASSMLLMGEPPWCAPGTESSFPSSDRNNAVLRYKEKKKARKFEKRVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQTRSC 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3332379 3337075 + MC02g0382 Mch2g0456 681378

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0456 433 ProSiteProfiles Zinc finger B-box type profile. 48 96 IPR000315 GO:0008270(InterPro)
Mch2g0456 433 ProSiteProfiles Zinc finger B-box type profile. 5 52 IPR000315 GO:0008270(InterPro)
Mch2g0456 433 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 9 423 - -
Mch2g0456 433 CDD Bbox1_BBX-like 52 96 IPR049808 -
Mch2g0456 433 Pfam CCT motif 376 418 IPR010402 GO:0005515(InterPro)
Mch2g0456 433 ProSiteProfiles CCT domain profile. 376 418 IPR010402 GO:0005515(InterPro)
Mch2g0456 433 MobiDBLite consensus disorder prediction 143 162 - -
Mch2g0456 433 SMART bboxneu5 5 52 IPR000315 GO:0008270(InterPro)
Mch2g0456 433 CDD Bbox1_BBX-like 10 52 IPR049808 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0456 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0456 Mch-Chr2:3332379 Mch2g0622 Mch-Chr2:4259185 1.27E-24 dispersed
Mch8g2659 Mch-Chr8:29924160 Mch2g0456 Mch-Chr2:3332379 2.81E-12 transposed
Mch9g1922 Mch-Chr9:20757163 Mch2g0456 Mch-Chr2:3332379 9.70E-16 transposed
Mch2g0456 Mch-Chr2:3332379 Mch4g0360 Mch-Chr4:2257391 4.87E-151 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch2g0456 . 6 432 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 3.0e-93 339.0
Mch4g0360 . 1 405 C2C2-CO-like Transcription Factor Family AT3G07650 54.9 7.0e-90 327.8
Mch2g0456 . 6 432 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.3e-91 333.6
Mch4g0360 . 1 405 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 2.1e-86 316.2
Mch2g0456 . 6 432 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.3e-91 333.6
Mch4g0360 . 1 405 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 2.1e-86 316.2
Mch4g0563 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 58.8 2.7e-53 206.1
Mch11g0147 . 1 194 C2C2-CO-like Transcription Factor Family AT1G75540 52.2 1.3e-50 197.2
Mch10g1031 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 51.4 2.9e-76 282.3
Mch10g0804 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 62.2 2.3e-56 215.3
Mch1g1566 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 75.2 1.4e-48 189.5
Mch10g0804 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 3.5e-58 221.5
Mch1g1566 . 1 166 C2C2-CO-like Transcription Factor Family AT4G38960 62.0 4.6e-50 194.5
Mch4g0563 . 1 233 C2C2-CO-like Transcription Factor Family AT4G39070 50.4 2.9e-52 202.2
Mch8g0821 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.2 8.1e-47 184.1
Mch2g1076 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 4.3e-40 161.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42870 PF06203 CCT 8.80E-15 CL0281 Mch TF