Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0456 ATGTCAATTGTAAACATGGGTTTCATGTGTGATTTTTGTGGGGATCAAAGGTCGATGGTTTACTGCCGATCTGATGCTGCTTGTTTGTGCTTATCGTGTGACCGAAATGTCCATTCGGCGAATGCCTTGTCGAGGCGCCACTCTAGAACGCTGTTATGTGAAAGATGCCATTTGCAACCTGCAGCGGTGAGATGTACTGAAGAGAGGATTTCTCTGTGTCAAAATTGTGACTGGACAGTTCATGGCACGTCTACCTCTGCTTCATCATCACACAAGAGGCAAACCATCAATTGTTACTCTGGCTGTCCATCGGCTGCAGAACTTTCTTCCATCTGGTCCTTTGTTTTGGATGTACCCTCTGTAAATGATGCTTGTGAGCAAGAGTTGGGATTAATGAGCATTGCTGAGACTGACTTGACCGGTGCCTGGAGCCCTTCAGAAAACAACGCAAGTCAAAGAATGCCTGGCTCAGCTAAATCTAGTGATGTTTGCAGCAGGGAAAAGTCAAATGTTTGGGTTGGATCATCTTCACTAACTGACTTTGGCTCTAAGCTTCACACTTCAGATCAGCCAGATGAATTGGCTAATGTGGCTTTACCCAAGGATTTTTTCAAGCATCACATTTTTGGTATGCAGTTTTGCTGTCCTGGAACAAAAGTTGCTGGACTCTGCAGCGAAGATGATGACATCTACAAGGAATTTGATATGGATGAAATGGATTTGAGTCTTGAAAACTATGAGGAATTATTTGGTGTAGGCTCTAATAATCCTGAAGAACTTTTTGAGAACTGTGGAATCGACAACCTTTTTGAGGCAAAAGACGTGTCTTTCGAAGATTCAATATGCCATGGCTCAGTTGCTGCAGAGGGGTCTTCCGTTGGAGTGGTTAAACCGATGCAGCCAGCCTATAGCAATGGTGCATCTGCCGATTCGATCATGAGTACTAAAACCGAACCGATTCTTTGTTTCAACACAAGGCAAGCACAATCGGGTCTGTCATTTTCTGGCCTCACTGGCGAGAGCAGTGCTGGTGATTATCAAGACTGTGGAGCCTCTTCAATGCTTCTAATGGGAGAGCCTCCATGGTGTGCCCCTGGCACTGAAAGTTCTTTCCCATCGTCTGATCGTAACAATGCCGTTCTGCGTTATAAGGAGAAAAAGAAGGCGCGCAAGTTTGAGAAAAGAGTGAGGTACGCCACCCGCAAGGCAAGAGCCGACGTGAGAAGGCGTGTGAAGGGACGGTTTGTGAAAGCCGGAGAGGCATACGATTACGACCCACTGAACCAGACTAGAAGCTGCTGA 1302 46.08 MSIVNMGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCHLQPAAVRCTEERISLCQNCDWTVHGTSTSASSSHKRQTINCYSGCPSAAELSSIWSFVLDVPSVNDACEQELGLMSIAETDLTGAWSPSENNASQRMPGSAKSSDVCSREKSNVWVGSSSLTDFGSKLHTSDQPDELANVALPKDFFKHHIFGMQFCCPGTKVAGLCSEDDDIYKEFDMDEMDLSLENYEELFGVGSNNPEELFENCGIDNLFEAKDVSFEDSICHGSVAAEGSSVGVVKPMQPAYSNGASADSIMSTKTEPILCFNTRQAQSGLSFSGLTGESSAGDYQDCGASSMLLMGEPPWCAPGTESSFPSSDRNNAVLRYKEKKKARKFEKRVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQTRSC 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3332379 3337075 + MC02g0382 Mch2g0456 681378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0456 433 ProSiteProfiles Zinc finger B-box type profile. 48 96 IPR000315 GO:0008270(InterPro)
Mch2g0456 433 ProSiteProfiles Zinc finger B-box type profile. 5 52 IPR000315 GO:0008270(InterPro)
Mch2g0456 433 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 9 423 - -
Mch2g0456 433 CDD Bbox1_BBX-like 52 96 IPR049808 -
Mch2g0456 433 Pfam CCT motif 376 418 IPR010402 GO:0005515(InterPro)
Mch2g0456 433 ProSiteProfiles CCT domain profile. 376 418 IPR010402 GO:0005515(InterPro)
Mch2g0456 433 MobiDBLite consensus disorder prediction 143 162 - -
Mch2g0456 433 SMART bboxneu5 5 52 IPR000315 GO:0008270(InterPro)
Mch2g0456 433 CDD Bbox1_BBX-like 10 52 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0456 Mch-Chr2:3332379 Mch2g0622 Mch-Chr2:4259185 1.27E-24 dispersed
Mch8g2659 Mch-Chr8:29924160 Mch2g0456 Mch-Chr2:3332379 2.81E-12 transposed
Mch9g1922 Mch-Chr9:20757163 Mch2g0456 Mch-Chr2:3332379 9.70E-16 transposed
Mch2g0456 Mch-Chr2:3332379 Mch4g0360 Mch-Chr4:2257391 4.87E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42870 PF06203 CCT 8.80E-15 CL0281 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0456 - - - 0.0