Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0458 ATGGGCCTCTCCAGCCTTCCTGCCCCGTCTGAAGGTGTACTGGGTGTGATCCTTGTAAATACAGCCCTATCAATTTCCATCTTCAAAGGTTTAGTTCGATCGATTCTCCATGTTGTTGGCATCCATCTCTCGTCGCCTACATCGTCAGCAGACTCCATGGAGAATGCTCCTGAATCTGTAGAGTTCCGTCTTAACCCGAATGGAAGTTACATTGAAGAGTTCCGCAGCCGGATCCCAGCAATTCTGTACGACAAAGTTCACAGCTGCAAATGGCTAGAACAGGACTGCTCAGTCTGCCTAACCCAGTTTGAACCTGAATCAGAGATAAACCATTTATCTTGTGGCCATCTTTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACCTTACGTGCCCACTGTGCCGGACTCCATTAATGCCCGAAGAAGAGACAGCTTCCTGCTTCTGG 456 49.12 MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPTSSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3340651 3341106 + MC02g0384 Mch2g0458 681380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0458 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 143 IPR013083 -
Mch2g0458 152 SMART ring_2 96 137 IPR001841 -
Mch2g0458 152 PANTHER - 1 152 IPR044249 -
Mch2g0458 152 SUPERFAMILY RING/U-box 84 144 - -
Mch2g0458 152 Pfam Ring finger domain 95 138 IPR001841 -
Mch2g0458 152 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0458 Mch-Chr2:3340651 Mch7g0647 Mch-Chr7:11130262 2.07E-15 dispersed
Mch2g0458 Mch-Chr2:3340651 Mch4g0358 Mch-Chr4:2246652 1.02E-69 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0458 K16285 - csv:101216645 298.13