Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0464 ATGGCGGATTCGGATAACGAATCGGGAGGACACAACAGCAACGCGAACAGCGAGCTATCGGCGAAAGAGCAGGACAGATTCCTGCCAATAGCGAACGTCAGCAGGATCATGAAGAAAGCGCTACCGGCGAACGCGAAGATCTCGAAAGACGCGAAAGAAACGGTACAGGAGTGCGTATCGGAGTTCATCAGCTTCATCACCGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAGAGGAAGACGATCAACGGCGACGATTTGTTGTGGGCCATGACGACGCTAGGTTTCGAAGAGTATGTGGAACCGCTCAAGACTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAGAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGGTGGTGGTGGGCCCGGCGGCAGTGGGGCTGGTGGCGGTGGTGGTGGAGGAGTCAACTCTGGTACTGCTGGTGGTGCTGGTGGCGGCGGCTTTAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGAGCATCATCAGGGGGGCGTCTACGGTGGCTCTGGTGGATTTCACCACATGGGCATCGGCGGCGGGAAGGGGGGAAGCGGTGGCTCCGGCACGGGGCACCGATAG 621 57.81 MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGGGGGPGGSGAGGGGGGGVNSGTAGGAGGGGFNGVGGMYGGMMMMEHHQGGVYGGSGGFHHMGIGGGKGGSGGSGTGHR 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3371249 3373360 - MC02g0390 Mch2g0464 681386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0464 206 MobiDBLite consensus disorder prediction 1 21 - -
Mch2g0464 206 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Mch2g0464 206 MobiDBLite consensus disorder prediction 114 144 - -
Mch2g0464 206 SUPERFAMILY Histone-fold 24 126 IPR009072 GO:0046982(InterPro)
Mch2g0464 206 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0464 206 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Mch2g0464 206 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Mch2g0464 206 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Mch2g0464 206 FunFam Nuclear transcription factor Y subunit B-3 16 134 - -
Mch2g0464 206 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 126 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Mch2g0464 206 Gene3D Histone, subunit A 15 131 IPR009072 GO:0046982(InterPro)
Mch2g0464 206 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0719 Mch-Chr10:4974682 Mch2g0464 Mch-Chr2:3371249 9.71E-58 dispersed
Mch10g1442 Mch-Chr10:13919189 Mch2g0464 Mch-Chr2:3371249 1.30E-41 dispersed
Mch2g0464 Mch-Chr2:3371249 Mch5g1786 Mch-Chr5:18304490 2.63E-54 dispersed
Mch2g0464 Mch-Chr2:3371249 Mch9g0769 Mch-Chr9:5755501 2.78E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42871 PF00808 CBFD_NFYB_HMF 2.00E-27 CL0012 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0464 K08065 - csv:101219076 241.121