Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0478 ATGTGGAGGGGTTGCTCTGGCGGAGCTGGGGTTTTTCTCAAGCTCTCAAGGTGCTTACTGAGGATGTCTTTGAGCTGCAAGTTTTCTACCTCTAACGGGAAATTCCCAGCTGGGTTTAAGCTGAAGAAGGCCAAGGAACATCTCTGTTTGTTAAATTCTACCGGAAAATGGAAGAAGAAGCTTCTCTGTCTTTGGATTTTAGCTGTAGTTGTAGTTTTGAGCAGTTGGTTTTTCTTGCGTCCGTGTAATGTGAGTAGTGGAACAAAACAGAAGACCTGGAACTTGTTCGACGAAGAAACTCGAACTTTGCTGCGGCATTTCAATGTAAGCAAGAATCAGCTTCAAGCTTTAGCTTCCTTTTTGTCCGAATCAGATCGGATGTTGTCCGTCCGGTGTACTGAAGATTTTGAATCTGACACATCACAGTTGGATGGAATTGCCTGTGCCCTGAAGTTACTGTACTGGGAGCAAGATTTGCAAAAGCAGTATTTGGGGGTTGAAGAAAGTGCAGATTCCAATATTGGGCAGTGCCCAATTCGAACTGAGAAGATCCCTGAAAATTCTGACCAATTATTCTCTGAGGACATAACTGTTCCATTTGCTTCAGACTTATCTGTCTCTTTACTTTCTACTAGTTATCAGCTTTGTGGAAAGATAATAGAACAAGCAGGAGTGCTAAGATACTTTTTGAGAAAGCACTGGGAGAGTTTCTGTAGATTGTTAATTGGATGTTTCTGGGTTCTCCTTGGAGTGATAGTGTTCCAGAACATGCCTGGTTTCCACCTGAAATTGTGGACCAATAAACATCCAAAGCCAGATCAACCGTTGGTTCATCAACAGTGGGTCTTGCTACAAAGAAAACAACATCAACAAGTCAAAGATTCTCCTAAAGGAGCTGGGAAATGGCGGAAGGTTCTCCTAAGAATATTTATTGTAGTTGGGATCATCTCGTCCATTTGGTTATTTTGGCGCCTGAACCAAAAAATCATTTTTAGAAGAGAAGAAACACTTACAAACATGTGTGATGAGCGAGCCCGGATGTTGCAGGACCAATTCAACGTTAGCATGAACCATGTTCATGCATTGGCTGTTCTTACCTCTACCTTCCACCATGGGAAACAACCTTCTGCCATTGATCAGAAAACATTTGGTGAATATACAGAAAGAACAGCCTTTGAAAGACCACTAACTAGTGGTGTAGCTTATGCTTTGAAAGTTAATCACTCAGAAAGAGAGGAATTCGAGATGAAGCATGGATGGACAATAAAGAAAATGGAGACTGAAGACCAAACTCATGTTCAAGATTGCATCCCAGAAAGTTTGGATCCTGCACCAATTCAAGATGAATATGCACCTGTCATATTTTCTCAAGAAACAGTCGCTCATATAGTTTCAATTGACATGATGTCTGGAAAAGAAGATCGTGAGAACATATTGCGAGCTAGGGCTTCAGGAAAGGGAGTGCTTACATCTCCATTTAAGCTTTTGAAATCTAATCATCTTGGGGTTGTCCTCACATTTGCTGTCTATAACACTGACCTACCACTAGATGCTACTCCACAGCAACGTATTGAAGCTACTGTTGGCTATCTAGGTGCATCTTATGATATCCCCTCACTGGTGGAGAAGCTTCTGCATCAGCTTGCTAGCAAGCAGACAATTGTGGTGCATGTTTATGATACAACCAATGAGTCTGCTCCCATCAAGATGTATGGTTCTGATTTTACCGACACGGGGCTATTGCATATTAGTAACCTTGATTTTGGGGATCCGTTAAGAAGGCATGAGATGCATTGTAGATTCAAGCATAAACCTCCACCTCCTTGGACAGCTATTAATGCATCAGTAGGCGTCCTAATCATTACCTTGCTGGTTGGTCATATTTTTCATGCAGCCATAAGTCGGATTGCGGAAGTGGAGAATGACTATCGCCAGATGATGGGGCTTAAAAGTCTTGCCGAAGCTGCTGATGTGGCAAAATCACAGTTTCTGGCAACAGTTTCCCATGAGATCAGAACACCAACGAATGGTGTTTTAGGCATGCTGAAATTGCTGATGGACACTAACCTTGATGCGAATCAACTGGACTATGCCAAGACTGCTTACGAGAGTGGAAAGGATCTAATATCACTTATAAATAAGGTTCTTGATCAAGCCAAGATAGAATCGGGGAGGCTTGAACTTGAATCTGTACCTTTTGATCTGCGTGCTCTACTTGATAACGTTCTCTCACCTTTTTCAGTAAAATCCAATGAAAATGGAATTGAGTTGGCTGTTTATGTCTCCGATTTGGTGCCTGAAGTTGTCATCGGTGACCCTGGACGCTTTCGACAAATAATTACTCATCTTGTTGGAAATTCTGTCAAGTTTACTCATAAAAAGGGACACATACTTGTCTCGGTGCATCTGGCTGATGAAGTGAGAGGCCCAGTTGATTTTATGGACATTGTGCTTAGACAAGGCACACATTTAGTTGGAGATACATCAAACAATAGTTGTACCACATTTAGTGGGTTACCTGTGGTGGACAGATGGAAGAGCTGGGAAGAGTTCAAAAAGTTCAGCAGGACAGATGCAGAGGAGAAACCCAAAACAATTCGAATACTCGTGACTGTTGAGGATACAGGTGTAGGAATTCCCCTAAATGCACAAAACCAAATTTTCAAACCTTTTATGCAGGCGGATAGCTCCACTTCACGGACGTATGGTGGCACTGGAATTGGACTGAGTATTAGCAAATGTTTGGTTGATCTTATGGATGGGGAGATTGGGTTTGTGAGTAAGCCTGGTGTGGGTAGCACATTTTCGTTTAATGTTTCTTTCCAGAAAGGGGAAGTAAGTTTGCTGGATACAAGATGGCCGCAGTGTGATCTTGGTGTTCTGGAGTTCCAAGGGCTAAGAGCATTAATAATAGATAATAGCTGCATTCGGGCAGAGGTCACAAGATATCATCTGCAGAGGTTGGGGATTTCTGTTGATATAGCTCTGAGTGCAGAATCTGCTTATCGATATCTATCTAATACTTCCAACACAAGAGCATCGACACAATTGGCCATGATTCTTATAGACAAAGACGTTTGGGACAAGAAAGTGGGTCTCAAGTTCCATCTTTTGTTTAGAGAGCATGTGGATAAAAGCGTGACAAAAGTCCAGATGAATACTCCAAAGCTCTTCCTGTTGGCCTCCGTTAGCTCCATTGAGCAAAATGAACTTAAATCCTCTGGTCATGTAAATAACGTATTAACTAAACCTCTTCAGTTAAACGAGATGGTCAGTTGCCTCCGAGAAGCCCTCGGTATTGGGAATAGGAATCAAGTAATTATTAAAAGACCATCTACTCTTGGAAATCTGCTGAAAGGAAAGCATATTTTGGTTGTGGATGACAATGCGGTAAACAGAAGGGTGGCAGAAGGCGCGCTAAAGAAATACGGAGTGATTGTAACTTGTGTAAAAAGTGGAAAGGATGCTGTGGCTCTCCTCAACCCACCGCACAACTTTGATGCTTGCTTCATGGACCTCCAGATGCCTGAGATGGATGGGTATGAAGCTACAAGACAGGTCCGGGCTGTAGAAAGTATGGTGAATACGAAAATTACATCTGGAGAAGTGTCAACTAAGGAGAGTAAGGTACATTGGCACACGCCAGTATTTGCTATGACAGCAGATTTAATTCAGGCTATGAATGAAGAGTGCCTGAAGTGTGGGATGGATGGTTATGTAGCTAAGCCATTTGAAGAAGAGCAACTTTATTCAGCTGTAGCATGCTTTTTTGAGACTGCTTGA 3783 42.32 MWRGCSGGAGVFLKLSRCLLRMSLSCKFSTSNGKFPAGFKLKKAKEHLCLLNSTGKWKKKLLCLWILAVVVVLSSWFFLRPCNVSSGTKQKTWNLFDEETRTLLRHFNVSKNQLQALASFLSESDRMLSVRCTEDFESDTSQLDGIACALKLLYWEQDLQKQYLGVEESADSNIGQCPIRTEKIPENSDQLFSEDITVPFASDLSVSLLSTSYQLCGKIIEQAGVLRYFLRKHWESFCRLLIGCFWVLLGVIVFQNMPGFHLKLWTNKHPKPDQPLVHQQWVLLQRKQHQQVKDSPKGAGKWRKVLLRIFIVVGIISSIWLFWRLNQKIIFRREETLTNMCDERARMLQDQFNVSMNHVHALAVLTSTFHHGKQPSAIDQKTFGEYTERTAFERPLTSGVAYALKVNHSEREEFEMKHGWTIKKMETEDQTHVQDCIPESLDPAPIQDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPLDATPQQRIEATVGYLGASYDIPSLVEKLLHQLASKQTIVVHVYDTTNESAPIKMYGSDFTDTGLLHISNLDFGDPLRRHEMHCRFKHKPPPPWTAINASVGVLIITLLVGHIFHAAISRIAEVENDYRQMMGLKSLAEAADVAKSQFLATVSHEIRTPTNGVLGMLKLLMDTNLDANQLDYAKTAYESGKDLISLINKVLDQAKIESGRLELESVPFDLRALLDNVLSPFSVKSNENGIELAVYVSDLVPEVVIGDPGRFRQIITHLVGNSVKFTHKKGHILVSVHLADEVRGPVDFMDIVLRQGTHLVGDTSNNSCTTFSGLPVVDRWKSWEEFKKFSRTDAEEKPKTIRILVTVEDTGVGIPLNAQNQIFKPFMQADSSTSRTYGGTGIGLSISKCLVDLMDGEIGFVSKPGVGSTFSFNVSFQKGEVSLLDTRWPQCDLGVLEFQGLRALIIDNSCIRAEVTRYHLQRLGISVDIALSAESAYRYLSNTSNTRASTQLAMILIDKDVWDKKVGLKFHLLFREHVDKSVTKVQMNTPKLFLLASVSSIEQNELKSSGHVNNVLTKPLQLNEMVSCLREALGIGNRNQVIIKRPSTLGNLLKGKHILVVDDNAVNRRVAEGALKKYGVIVTCVKSGKDAVALLNPPHNFDACFMDLQMPEMDGYEATRQVRAVESMVNTKITSGEVSTKESKVHWHTPVFAMTADLIQAMNEECLKCGMDGYVAKPFEEEQLYSAVACFFETA 1260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3455352 3465510 + MC02g0403 Mch2g0478 681400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0478 1260 CDD HATPase_EvgS-ArcB-TorS-like 776 937 - -
Mch2g0478 1260 SMART HisKA_10 659 724 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch2g0478 1260 FunFam Histidine kinase 4 378 605 - -
Mch2g0478 1260 Pfam Response regulator receiver domain 1123 1253 IPR001789 GO:0000160(InterPro)
Mch2g0478 1260 SMART HKATPase_4 771 943 IPR003594 -
Mch2g0478 1260 ProSiteProfiles Histidine kinase domain profile. 666 943 IPR005467 -
Mch2g0478 1260 Gene3D - 1116 1259 - -
Mch2g0478 1260 Gene3D - 723 945 IPR036890 -
Mch2g0478 1260 Pfam His Kinase A (phospho-acceptor) domain 659 724 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch2g0478 1260 SMART REC_2 1121 1253 IPR001789 GO:0000160(InterPro)
Mch2g0478 1260 ProSiteProfiles CHASE domain profile. 374 598 IPR006189 -
Mch2g0478 1260 Gene3D - 325 377 - -
Mch2g0478 1260 Gene3D - 85 125 - -
Mch2g0478 1260 PANTHER TWO-COMPONENT HISTIDINE KINASE 301 1255 IPR050956 -
Mch2g0478 1260 CDD REC_hyHK_CKI1_RcsC-like 1123 1253 - -
Mch2g0478 1260 Gene3D - 962 1106 - -
Mch2g0478 1260 Gene3D CHASE domain 378 605 IPR042240 -
Mch2g0478 1260 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 713 939 IPR036890 -
Mch2g0478 1260 Gene3D - 628 722 - -
Mch2g0478 1260 Pfam CHASE domain 377 571 IPR006189 -
Mch2g0478 1260 SMART CHASE_2 374 573 IPR006189 -
Mch2g0478 1260 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 652 725 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch2g0478 1260 CDD HisKA 659 720 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch2g0478 1260 FunFam Histidine kinase 4 631 722 - -
Mch2g0478 1260 ProSiteProfiles Response regulatory domain profile. 1122 1257 IPR001789 GO:0000160(InterPro)
Mch2g0478 1260 PRINTS Bacterial sensor protein C-terminal signature 927 940 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch2g0478 1260 PRINTS Bacterial sensor protein C-terminal signature 903 921 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch2g0478 1260 PRINTS Bacterial sensor protein C-terminal signature 868 882 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch2g0478 1260 PRINTS Bacterial sensor protein C-terminal signature 886 896 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch2g0478 1260 SUPERFAMILY CheY-like 962 1099 IPR011006 -
Mch2g0478 1260 SUPERFAMILY CheY-like 1118 1254 IPR011006 -
Mch2g0478 1260 ProSiteProfiles Response regulatory domain profile. 967 1098 IPR001789 GO:0000160(InterPro)
Mch2g0478 1260 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 867 941 IPR003594 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0478 Mch-Chr2:3455352 Mch4g0340 Mch-Chr4:2115024 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42873 PF03924 CHASE 5.70E-35 CL0165 Mch TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0478 K14489 - csv:101221294 2115.5