Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0509 ATGATGGAGAAAATGGACGACGAAGAATTTTCAAATTGTTTTCTCCAAATCCCAGCTGCCGGATCCAACCCTTCTCTGGCAAAGAAGAAGAGAAATCTCCCCGGAAACCCAGATCCTGAAGCAGAAGTTGTGGCGCTGTCGCCCAAGACTCTAATGGCAACTAACAGATTCGTGTGTGAAATATGCGGGAAGGGGTTTCAAAGAGACCAGAACCTACAGCTTCACAGACGAGGCCACAACCTTCCATGGAAGCTGAAACAAAGGAGCAGCAAAGAGCCGAGAAAACGAGTGTATGTTTGCCCTGAGAAGAGCTGTGTGCACCACCATCCTTCAAGGGCACTGGGAGACCTCACTGGTATAAAGAAGCACTTTTGTAGAAAGCACGGCGAAAAGAAGTGGAGGTGCGATAAGTGCTCCAAGAGATATGCTGTGCAGTCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACCAGAGAGTACAAATGTGACTGCGGTACTCTATTTTCAAGGAGAGACAGCTTCATCACTCACAGAGCATTCTGCGATGCGTTGGCGGAAGAGACAGCCAGAGTAAATTACGCAGCTACAAGCATAAGCAACGCTGCCAATAACAACTTCAATTACCAGTTCATGGGCGGAGGGACAGAATCAGCATTATTCATGCCACAGCCACAACATTATTTTCCAGCAGCTTCTATTTTCAAGCCAATCATCTCAGGAAATGAAGGAAGAACGTCCTTAAGAAATGCTAATAACCTTAACCTTGGTGGCTCCATGGTCAGTAGCAGTTCAGGGTTAATTTACTGTACTGACCCTGTACTTCCCCCAGCAGCTGGTGATAATTATAATTTGGATGAAAATGAGAAGTTGGTAAGGGCCACGGGTGGTGGTGCTTCTTCAATGTACCGCCACCAATTACTACAGCAATTGAACCATAGCCAAATGGCAAATATGTCAGCCACTGCTTTGCTGCAAAAGGCTGCCCAAATTGGGGCAACTTCCACCACCACCTCAGACCCATCATTATTCCAACTCCAAGAGGGTTATGTGTTCAAATGCAGCAGTGGGAGTGGTACGGCAGCTGCTGGCTGTGGATTTTCAGCTGGTACAGTTAACCCAATTATGGAGGTGGAACTGGAGGGCATGTACCCTGCAAAACGGCGTCGTACAGATCAGTGTGAACAAGAGCCTGGAACTGGAACTGGAACTGGAACTGGAACTGGAGGGCAGACTAGGGATTTTCTTGGAGTTGGCGCCCACACTACCATTTCCCACGCCTCATCTATCAATGGATGGATC 1299 47.65 MMEKMDDEEFSNCFLQIPAAGSNPSLAKKKRNLPGNPDPEAEVVALSPKTLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWRCDKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVNYAATSISNAANNNFNYQFMGGGTESALFMPQPQHYFPAASIFKPIISGNEGRTSLRNANNLNLGGSMVSSSSGLIYCTDPVLPPAAGDNYNLDENEKLVRATGGGASSMYRHQLLQQLNHSQMANMSATALLQKAAQIGATSTTTSDPSLFQLQEGYVFKCSSGSGTAAAGCGFSAGTVNPIMEVELEGMYPAKRRRTDQCEQEPGTGTGTGTGTGGQTRDFLGVGAHTTISHASSINGWI 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3633924 3635973 - MC02g0425 Mch2g0509 681431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0509 433 MobiDBLite consensus disorder prediction 395 410 - -
Mch2g0509 433 FunFam protein indeterminate-domain 12-like 36 104 - -
Mch2g0509 433 FunFam protein indeterminate-domain 5, chloroplastic-like 111 190 - -
Mch2g0509 433 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 94 128 - -
Mch2g0509 433 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Mch2g0509 433 MobiDBLite consensus disorder prediction 387 412 - -
Mch2g0509 433 Gene3D Classic Zinc Finger 91 181 - -
Mch2g0509 433 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Mch2g0509 433 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 420 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch2g0509 433 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 132 156 - -
Mch2g0509 433 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 159 196 - -
Mch2g0509 433 Gene3D Classic Zinc Finger 53 80 - -
Mch2g0509 433 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Mch2g0509 433 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Mch2g0509 433 SMART c2h2final6 133 153 IPR013087 -
Mch2g0509 433 SMART c2h2final6 57 79 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0509 Mch-Chr2:3633924 Mch5g1758 Mch-Chr5:18158748 3.08E-106 dispersed
Mch2g0509 Mch-Chr2:3633924 Mch4g0283 Mch-Chr4:1812106 1.09E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42878 PF00096 zf-C2H2 0.0018 CL0361 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0509 K25870 - csv:101211656 496.123