Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0516 ATGCAAAGGCACAACAACGCCGCTCTGCAGCCGGCCGCCGCGTGCGCGGCCTGCAAGCACCAGAGGAAGAAGTGCCACGACACGTGCCCGCTGGCGCCGTACTTCCCGGCCGACCGGAACCGGGAATTCCAAGCGGTCCACAAGGTGTTTGGAGTCAGCAACGTGACCAAAATGGTGAAGAACGTGAGAGAAGAAGACCGGAGAAAGGCTGTGGATTCTCTAATATGGGAAGCCGTGTGCAGGCAAAACGACCCCGTTTTGGGGCCCTATGGAGAATACAGAAGGGTTTTGGAAGAGCTTAAAGTGTGTAAATTATTGTCTCAAAATCAAAGCCAAGGCCAAAACCCATTTGCGGGTTATAAACCAATAATGCCGTGTTTTGGGGGGTGGAACAATGGCACTAATTCCACTAATAATAATGGGAATGGGATAATGGGAATTAATATCAATGGAGGAGTTAATAGTAGCAATTTGTTTAATTACCTTCATGATAATCTTAGTGCCATTATTGATTCCAGTCATTACAGTAATTCCTCTACTTATAATTTGCAAAGCCCTGAGAAACTCATCAGATTGCAGCAGGATAAAGAGATTACTTCAAGCGTGGTTGTGCCACTCCAACAGCAAGTACAGCAACAGCAGCATCCTAATTTTCACCAGTTGTAT 666 46.7 MQRHNNAALQPAAACAACKHQRKKCHDTCPLAPYFPADRNREFQAVHKVFGVSNVTKMVKNVREEDRRKAVDSLIWEAVCRQNDPVLGPYGEYRRVLEELKVCKLLSQNQSQGQNPFAGYKPIMPCFGGWNNGTNSTNNNGNGIMGININGGVNSSNLFNYLHDNLSAIIDSSHYSNSSTYNLQSPEKLIRLQQDKEITSSVVVPLQQQVQQQQHPNFHQLY 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3674653 3675318 + MC02g0431 Mch2g0516 681438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0516 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 112 - -
Mch2g0516 222 Pfam Lateral organ boundaries (LOB) domain 14 103 IPR004883 -
Mch2g0516 222 ProSiteProfiles LOB domain profile. 13 113 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0516 Mch-Chr2:3674653 Mch4g0045 Mch-Chr4:317030 5.85E-23 dispersed
Mch2g0516 Mch-Chr2:3674653 Mch9g0250 Mch-Chr9:1869935 1.72E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42880 PF03195 LOB 7.30E-33 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0516 - - - 0.0