Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0561 ATGCCGGTCCTCCTCTGCCGCGGTTTTGGGCTCTTTGGGGCCTTTTTCTTTGCGGCGGCTGTGCTCCAGGGTTTCGCGGCGGCGGCTCAGCTCCAACACCGTGCTCCGGATCTACATTGGCTCCCGGCCACCGCCACGTGGTATGGAAGCCCCGAGGGCGACGGTAGCGACGGTGGAGCCTGTGGGTATGGGAATCTAGTGGACGTGAAGCCCCTAAAGGCCAGGGTTGGCGCTGTGAGTCCAGTGCTGTTCAAAAATGGCGAAGGGTGTGGAGCCTGTTACAAGGTGAAGTGTCTAGACCAGAGCATTTGCTCCCGACGAGCCGTGACCATAATCGTCACCGACGAGTGCCCCGGTGGGTACTGTTCCAACGGCAAAACCCACTTCGATCTCAGCGGCGCCGCCTTCGGCCGTATGGCCATCGCCGGCGAAAATGGGCAGCTCAGGAACCGAGGCGAAATCCCAGTCATTTACCGGCGGACTCCTTGTAAGTACCCAGGCAAGAACATCGCCTTCCATGTCAACGAAGGCTCAACAGATTACTGGCTCTCACTCCTGGTTGAATTCGAGGATGGCGATGGGGACATTGGTGCAATGCAAATAAGAGAAGCAAGTTCGAGCGAGTGGCTGGATATGAACCATGTGTGGGGGGCAAATTGGTGCATTATTGGTGGGCCTTTAAAAGGCCCATTCTCGGTGAGATTAACAACATTATCTACGGGAAGAAGCCTCTCGGCCAGGGACATAATCCCAAGGAATTGGTCTCCCAAGGCAACTTACACTTCTCGCCTTAATTTCTTCTCTTGA 807 56.01 MPVLLCRGFGLFGAFFFAAAVLQGFAAAAQLQHRAPDLHWLPATATWYGSPEGDGSDGGACGYGNLVDVKPLKARVGAVSPVLFKNGEGCGACYKVKCLDQSICSRRAVTIIVTDECPGGYCSNGKTHFDLSGAAFGRMAIAGENGQLRNRGEIPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDIGAMQIREASSSEWLDMNHVWGANWCIIGGPLKGPFSVRLTTLSTGRSLSARDIIPRNWSPKATYTSRLNFFS 268
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 3936759 3939205 + MC02g0469 Mch2g0561 681483
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0561 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 262 IPR007117 -
Mch2g0561 268 CDD DPBB_EXPB_N 40 163 - -
Mch2g0561 268 Gene3D - 26 164 IPR036908 -
Mch2g0561 268 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576(InterPro)
Mch2g0561 268 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576(InterPro)
Mch2g0561 268 PRINTS Expansin/Lol pI family signature 209 223 IPR007118 GO:0005576(InterPro)
Mch2g0561 268 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576(InterPro)
Mch2g0561 268 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576(InterPro)
Mch2g0561 268 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576(InterPro)
Mch2g0561 268 SMART dpbb_1 76 158 IPR007112 -
Mch2g0561 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 168 IPR007112 -
Mch2g0561 268 SUPERFAMILY PHL pollen allergen 168 262 IPR036749 -
Mch2g0561 268 Pfam Lytic transglycolase 78 157 IPR009009 -
Mch2g0561 268 FunFam Beta-expansin 3 165 267 - -
Mch2g0561 268 Pfam Expansin C-terminal domain 170 251 IPR007117 -
Mch2g0561 268 FunFam Expansin B3 26 164 - -
Mch2g0561 268 PRINTS Major pollen allergen Lol pI signature 238 255 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch2g0561 268 PRINTS Major pollen allergen Lol pI signature 188 203 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch2g0561 268 PRINTS Major pollen allergen Lol pI signature 172 187 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch2g0561 268 PRINTS Major pollen allergen Lol pI signature 140 155 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch2g0561 268 PRINTS Major pollen allergen Lol pI signature 78 89 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch2g0561 268 PRINTS Major pollen allergen Lol pI signature 118 133 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch2g0561 268 PANTHER EXPANSIN-B3 24 266 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
Mch2g0561 268 Gene3D - 165 267 IPR036749 -
Mch2g0561 268 SUPERFAMILY Barwin-like endoglucanases 39 167 IPR036908 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0561 Mch-Chr2:3936759 Mch5g0027 Mch-Chr5:235024 7.43E-84 dispersed
Mch2g0561 Mch-Chr2:3936759 Mch4g0162 Mch-Chr4:1101870 6.11E-156 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0561 K20628 - csv:101202998 481.87