Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0589 ATGAGATGGCATTCCTTCTACACCAGAGCCTCTCAGGCTTTTCACGACCATCCTACCATCTCCAAAATTCTCATCGTTTTCACTCTCAGTGGCGGTGGACTGGTGGCATCTTCTAATGGCAGATTGCTGTATCCTTCTGCATATGCTGATGCAGTCCAACAAGATGACTGCAAGAAGAAGAAGGTGGTGGTGCTTGGAACAGGATGGGCTGGTACCAGCTTTCTGAAGAACCTTAAGAGCTCCTCTTATGATGTTCATGTTATTTCTCCTCATAATTACTTTGCCTTCACCCCTTTGCTTCCCAGTGTCACTTGCGGCACAGTCGAAGCACGCAGCATCGTTGAACCAATTCGTACTATCACAAAGAAGAAAGGTTTGGGTATTAAATTTAGGGAAGCTGAGTGCTATAAGATAGATGCAGAGAAGAAGGTGGTGTTCTGTCGATCAAGTCAAAACACGAATTTGGGTGGCAGAGAAGAATTTTCTGTAGACTACGACTATCTGATAATAGCCATGGGAGCTAAATCCAACACTTTTAACACCCCTGGAGTTGAGGAATATGCTCACTTCTTGAAGGGAGTGGAAGATGCTCAGAGGATTCGTCAGACTGTAATTGATTGTTTCGAGCGAGCCAGCCTTCCAAATCTTAGTGAAGAAGAGAAGAAGAGAACTCTTCACTTTGTAATAGTTGGAGGTGGTCCAACTGGGGTGGAATTTGCCGCAGAGCTTCATGATTTTGCAGTTGAGGACTTAGGAGTGTTGTATCCTTCATTGAAAGACTATGTGAAAATAACCCTCCTAGAGGCAGGGGATCATATTTTGAACATGTTTGACAAGAGGATTACTGCCTTTGCTGAAGAAAAATTTCAAAGAGATGGGATTAGTGTAAAAACTGGTTCCATGGTGGTAAAAGTAAGTGACAAGGAAATCTCCACCAAAGAAAGAACAACTGGTGAATTTGTGTCTGTTCCTTATGGAATGGTCGTGTGGTCCACCGGCATTGGCCCTCGTCCTCAAGTCGTCGATTTCATGAAGCAGATTGGTCAGACTAACAGAAGAGCTTTGGCGACCGATGAGTGGCTAAGGGTTGAAGGATGTGATGACGTCTATGCTCTTGGTGATTGTGCTACCATAAATCAAAGAAGAGTCATGGAAGATATTGCAGTAATATTCAGTAAGGCAGACAAGAACAAGTCAGGAACTTTAGGCCTGCAAGATTTTCAAGAAGTGGTAGGTGATATCTGTGAGAGGTACCCTCAAGTAGCGCTCTATCTGAAGAGGAATCAAATGAAGAACTTTGCAGCTTTGTTGAAGAAGTCACAATCGGACGCACAGAATCATACGGCTGAACTGGATATCGAAACCTTTAAATCCGTACTTTCTGAAGTTGATTCTCAGATGAAAAATCTGCCTGCTACTGCTCAAGTGGCTGCTCAACAAGGTGAATATCTTGCAAGCTGCTTCAACCGGATGGAGCAGTGTGAAAAGTACCCTGAAGGCCCTCTCCGATTTAGAGGGACTGGACGCCACCGGTTCCATCCTTTCAGGTATAAGCATTTTGGGCAGTTTGCTCCTCTGGGGGGAGAACAAGCTGCAGCTCAACTACCTGGAGATTGGATCTCAATTGGTCACAGCAGCCAGTGGCTTTGGTACTCCGTTTATGCAAGCAAGCTAGTAAGCTGGCGCACAAGGTTTCTGGTCATCTCAGATTGGGGTAGAAGATTCATCTTCGGCAGAGATTCGAGCAGAATCTGA 1755 44.84 MRWHSFYTRASQAFHDHPTISKILIVFTLSGGGLVASSNGRLLYPSAYADAVQQDDCKKKKVVVLGTGWAGTSFLKNLKSSSYDVHVISPHNYFAFTPLLPSVTCGTVEARSIVEPIRTITKKKGLGIKFREAECYKIDAEKKVVFCRSSQNTNLGGREEFSVDYDYLIIAMGAKSNTFNTPGVEEYAHFLKGVEDAQRIRQTVIDCFERASLPNLSEEEKKRTLHFVIVGGGPTGVEFAAELHDFAVEDLGVLYPSLKDYVKITLLEAGDHILNMFDKRITAFAEEKFQRDGISVKTGSMVVKVSDKEISTKERTTGEFVSVPYGMVVWSTGIGPRPQVVDFMKQIGQTNRRALATDEWLRVEGCDDVYALGDCATINQRRVMEDIAVIFSKADKNKSGTLGLQDFQEVVGDICERYPQVALYLKRNQMKNFAALLKKSQSDAQNHTAELDIETFKSVLSEVDSQMKNLPATAQVAAQQGEYLASCFNRMEQCEKYPEGPLRFRGTGRHRFHPFRYKHFGQFAPLGGEQAAAQLPGDWISIGHSSQWLWYSVYASKLVSWRTRFLVISDWGRRFIFGRDSSRI 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4066076 4071115 + MC02g0495 Mch2g0589 681511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0589 584 SUPERFAMILY EF-hand 344 469 IPR011992 -
Mch2g0589 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 50 411 - -
Mch2g0589 584 Gene3D - 49 429 - -
Mch2g0589 584 Gene3D - 430 583 - -
Mch2g0589 584 SUPERFAMILY FAD/NAD(P)-binding domain 220 379 IPR036188 -
Mch2g0589 584 Pfam Pyridine nucleotide-disulphide oxidoreductase 60 381 IPR023753 GO:0016491(InterPro)
Mch2g0589 584 Pfam NDH2 C-terminal domain 519 580 IPR054585 -
Mch2g0589 584 ProSiteProfiles EF-hand calcium-binding domain profile. 382 417 IPR002048 GO:0005509(InterPro)
Mch2g0589 584 ProSitePatterns EF-hand calcium-binding domain. 395 407 IPR018247 -
Mch2g0589 584 PANTHER NADH DEHYDROGENASE 47 584 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Mch2g0589 584 SUPERFAMILY FAD/NAD(P)-binding domain 59 278 IPR036188 -
Mch2g0589 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 62 81 - -
Mch2g0589 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 226 244 - -
Mch2g0589 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 165 183 - -
Mch2g0589 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 428 583 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0589 Mch-Chr2:4066076 Mch2g0833 Mch-Chr2:5723072 2.25E-70 dispersed
Mch9g1876 Mch-Chr9:20444378 Mch2g0589 Mch-Chr2:4066076 4.80E-06 transposed
Mch1g1834 Mch-Chr1:18437797 Mch2g0589 Mch-Chr2:4066076 3.89E-69 wgd
Mch2g0589 Mch-Chr2:4066076 Mch3g1172 Mch-Chr3:14961359 5.60e-312 wgd
Mch2g0589 Mch-Chr2:4066076 Mch4g0180 Mch-Chr4:1210582 4.03E-264 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0589 K03885 - csv:101209855 1065.06