Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch2g0613 | CTGTCCAACCTAAGGATTTCTTGGATGCCTAAATTAGAAAAATTGCAAGCTAGACGGCCTGGATCATCATCCGTGGCTGAGACTCTAGCAAAATGGAAAGATTACAATGATCACCTTGATTCATGTAACGATGAGACCAAACTCACCCGTAGAGTTCCAGCAAAAGGATCAAAAAAAGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATTTGCGATGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGCAAGTGGGTTGCAGAAATTCGGGCACCGAATAGGGGAAGTCGGCTCTGGTTGGGTACATTTCCATCTGCCATTGAAGCTGCTCTTGCTTATGATGAAGCTGCAAGGGCAATGTATGGCACTATGGCTCGCCTCAATTTTCCCAACATCTCAATTCCAACCTTGCTAAAAGAAAAAGAATCAGCCACAAAGGATTCTCCTGAAATCAAGAGGCCTTCAATCTCTTCTTTAGGGTCAACTTCACTTAGTCTGAGTTCCGAGTCCACAATAACATCAGATCACTCTGAGGATTGTGCAGTCGAAGATGTC | 558 | 44.8 | LSNLRISWMPKLEKLQARRPGSSSVAETLAKWKDYNDHLDSCNDETKLTRRVPAKGSKKGCMKGKGGPENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPSAIEAALAYDEAARAMYGTMARLNFPNISIPTLLKEKESATKDSPEIKRPSISSLGSTSLSLSSESTITSDHSEDCAVEDV | 186 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4217427 | 4217984 | - | MC02g0512 | Mch2g0613 | 681535 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch2g0613 | 186 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 14 | 172 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Mch2g0613 | 186 | CDD | AP2 | 73 | 132 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0613 | 186 | PRINTS | Ethylene responsive element binding protein signature | 97 | 113 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0613 | 186 | PRINTS | Ethylene responsive element binding protein signature | 75 | 86 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0613 | 186 | ProSiteProfiles | AP2/ERF domain profile. | 74 | 131 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0613 | 186 | MobiDBLite | consensus disorder prediction | 151 | 176 | - | - | |
Mch2g0613 | 186 | FunFam | Ethylene-responsive transcription factor 2 | 73 | 132 | - | - | |
Mch2g0613 | 186 | MobiDBLite | consensus disorder prediction | 142 | 186 | - | - | |
Mch2g0613 | 186 | Pfam | AP2 domain | 74 | 123 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0613 | 186 | SMART | rav1_2 | 74 | 137 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0613 | 186 | Gene3D | AP2/ERF domain | 74 | 133 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch2g0613 | 186 | SUPERFAMILY | DNA-binding domain | 74 | 131 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0613 | Mch-Chr2:4217427 | Mch4g2490 | Mch-Chr4:25654366 | 1.56E-59 | dispersed | |
Mch2g0613 | Mch-Chr2:4217427 | Mch8g0812 | Mch-Chr8:5716897 | 4.89E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42888 | PF00847 | AP2 | 2.10E-14 | CL0081 | Mch | TF |
Pathway information
