Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0613 CTGTCCAACCTAAGGATTTCTTGGATGCCTAAATTAGAAAAATTGCAAGCTAGACGGCCTGGATCATCATCCGTGGCTGAGACTCTAGCAAAATGGAAAGATTACAATGATCACCTTGATTCATGTAACGATGAGACCAAACTCACCCGTAGAGTTCCAGCAAAAGGATCAAAAAAAGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATTTGCGATGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGCAAGTGGGTTGCAGAAATTCGGGCACCGAATAGGGGAAGTCGGCTCTGGTTGGGTACATTTCCATCTGCCATTGAAGCTGCTCTTGCTTATGATGAAGCTGCAAGGGCAATGTATGGCACTATGGCTCGCCTCAATTTTCCCAACATCTCAATTCCAACCTTGCTAAAAGAAAAAGAATCAGCCACAAAGGATTCTCCTGAAATCAAGAGGCCTTCAATCTCTTCTTTAGGGTCAACTTCACTTAGTCTGAGTTCCGAGTCCACAATAACATCAGATCACTCTGAGGATTGTGCAGTCGAAGATGTC 558 44.8 LSNLRISWMPKLEKLQARRPGSSSVAETLAKWKDYNDHLDSCNDETKLTRRVPAKGSKKGCMKGKGGPENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPSAIEAALAYDEAARAMYGTMARLNFPNISIPTLLKEKESATKDSPEIKRPSISSLGSTSLSLSSESTITSDHSEDCAVEDV 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4217427 4217984 - MC02g0512 Mch2g0613 681535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0613 186 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 172 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Mch2g0613 186 CDD AP2 73 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0613 186 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0613 186 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0613 186 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0613 186 MobiDBLite consensus disorder prediction 151 176 - -
Mch2g0613 186 FunFam Ethylene-responsive transcription factor 2 73 132 - -
Mch2g0613 186 MobiDBLite consensus disorder prediction 142 186 - -
Mch2g0613 186 Pfam AP2 domain 74 123 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0613 186 SMART rav1_2 74 137 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0613 186 Gene3D AP2/ERF domain 74 133 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0613 186 SUPERFAMILY DNA-binding domain 74 131 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0613 Mch-Chr2:4217427 Mch4g2490 Mch-Chr4:25654366 1.56E-59 dispersed
Mch2g0613 Mch-Chr2:4217427 Mch8g0812 Mch-Chr8:5716897 4.89E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42888 PF00847 AP2 2.10E-14 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0613 - - - 0.0