Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0619 ATGGACTACTCTTCCGGCAATTGGAATTGGCTCTTCGACTACACTACAATGGATGATATCGCCGCCGCCGACTTCTCGCCGCCGCAGTCCATCAGTTTCACCTGGTCCAATCCCTCCATCAACTTTTCATCCAAAGACAGCCTGGATGTAGACTGCTCATGTGGAGATCAGGACAGCTTACAGGAAGTGGGTCGGAAACGGCCAAGGGCTGAAACAAGTGCGGCATCTGCCTCCAAAGCTTGCAGAGAGAAATTGAGGAGAGATAAGCTGAATGAGAGGTTCTTAGAATTGGCTGCAATCCTGGAACCTGGAAAACCACCCAAAACAGACAAGGTTGCAATCTTGAGTGATGCTATCAGAATGGTGACTGATTTACAATGTGAAACCCAGAAGCTGAAAGAATCAAAAGAGGATTTGAAGGCAAAAATCAAAGAATTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAGAGGTTGAGAGCTGAGAAAGAAAAGTTGGAGCTGCAAATCAAAGCGGCAAATACTCAAGCAGCTGACGTCCAGCGTCCTCCCTCTGCATTGTCAGCTGCATTTACAGCACAAGGGCAAGCTGCTGGCAACAAGTTGATGCCTTTCATTGGTTATCCTGGCATTGCCATGTGGCAGTTCTTGCCACCTGCAGCAATCGACATATCCCAGGATCACGTGCTCCGTCCACCGGTTGCTTAA 711 47.82 MDYSSGNWNWLFDYTTMDDIAAADFSPPQSISFTWSNPSINFSSKDSLDVDCSCGDQDSLQEVGRKRPRAETSAASASKACREKLRRDKLNERFLELAAILEPGKPPKTDKVAILSDAIRMVTDLQCETQKLKESKEDLKAKIKELKVEKNELRDEKQRLRAEKEKLELQIKAANTQAADVQRPPSALSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPAAIDISQDHVLRPPVA 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4246485 4251013 + MC02g0517 Mch2g0619 681541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0619 236 FunFam Transcription factor bHLH34 65 123 - -
Mch2g0619 236 PANTHER BHLH TRANSCRIPTION FACTOR 9 236 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Mch2g0619 236 MobiDBLite consensus disorder prediction 59 78 - -
Mch2g0619 236 Coils Coil 122 177 - -
Mch2g0619 236 Gene3D - 65 123 IPR036638 GO:0046983(InterPro)
Mch2g0619 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 125 IPR011598 GO:0046983(InterPro)
Mch2g0619 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 150 IPR036638 GO:0046983(InterPro)
Mch2g0619 236 Gene3D arf6 gtpase in complex with a specific effector, jip4 124 178 - -
Mch2g0619 236 Pfam Helix-loop-helix DNA-binding domain 77 126 IPR011598 GO:0046983(InterPro)
Mch2g0619 236 CDD bHLH_AtILR3_like 79 154 - -
Mch2g0619 236 SMART finulus 80 131 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1193 Mch-Chr10:9333590 Mch2g0619 Mch-Chr2:4246485 6.25E-52 dispersed
Mch1g1586 Mch-Chr1:17040029 Mch2g0619 Mch-Chr2:4246485 1.67E-08 dispersed
Mch2g0619 Mch-Chr2:4246485 Mch5g0087 Mch-Chr5:559774 9.13E-29 dispersed
Mch11g1152 Mch-Chr11:8087487 Mch2g0619 Mch-Chr2:4246485 5.61E-55 wgd
Mch2g0619 Mch-Chr2:4246485 Mch3g1203 Mch-Chr3:15229738 2.63E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42889 PF00010 HLH 9.20E-10 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0619 - - - 0.0