Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0632 ATGAACGATTTGCTCACGGACTCGTTCGTTAGCAATGTCAAAGATCAGGCTTCCAAAGAAATTGATCTCGAAAAGGGAACACGAGTTCTGCAGGGAAATTCTGACATGGGAACGGAGGCTTTCAATAAGCAGGTACAAGATATTGAGATACAAGTAGATAAGCTCTCTGGGCTTCTTATTAAACTAAAGGATGCCAACGAGGAATCAAAGTCTGTTACAAAAGCATCAGAGATGAAAGCTATCAAGAAGCGGATGGAAAGGGATGTCGATGAAGTGGGAAAAATCGCGCGTAATGTCAAAGGGAAGCTGGAAGTTATAAATAAAGATAACTTAACAAATAGGCAGAAGCCGGGATGCGAGAAGGGAACAGCTATCGACAGAGCAAGAATGAACGTGACAAATGCCTTGACAAAAAAGTTCAAGGATCTGATGATAGAATTTCAGACCCTTCGTCAAAGAATTCAAGATGAGTATCGCGAAGTTGTGGAAAGACGAGTGATTACAGTTACGGGTACCAAACCAGACGAGACGATGATTGATCACCTGATAGAAACTGGAAACAGTGAGCAAATATTTCAGAACGCGTTTGAACAAATGGGACGAGGACAGGTCATCAGTGCTGTGGAAGAAATTCAAGAGCGACACGACGCAGTTAAAGAAATTGAGAAAAGGCTCTCGGAATTGCATCAGATATACCTTGACATGGCAGTTTTAGTGGAGTCCCAAGCTGAAATTTTGGATAACATTGAAAATCAGGTGACGAACGCAGTCGACCATGTTCGGTCAGGGACTGATGCACTCCAGACAGCAAAGAGCTTGCAAAGGAAATCAAGAAAATGCATGATGATTTCCATCATTCTGCTCCTGGTTATTGCAATCATAATCGTCCTCTCAGTTTTGAAGCCGTGGAAGAAG 915 42.51 MNDLLTDSFVSNVKDQASKEIDLEKGTRVLQGNSDMGTEAFNKQVQDIEIQVDKLSGLLIKLKDANEESKSVTKASEMKAIKKRMERDVDEVGKIARNVKGKLEVINKDNLTNRQKPGCEKGTAIDRARMNVTNALTKKFKDLMIEFQTLRQRIQDEYREVVERRVITVTGTKPDETMIDHLIETGNSEQIFQNAFEQMGRGQVISAVEEIQERHDAVKEIEKRLSELHQIYLDMAVLVESQAEILDNIENQVTNAVDHVRSGTDALQTAKSLQRKSRKCMMISIILLLVIAIIIVLSVLKPWKK 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4309381 4312803 - MC02g0530 Mch2g0632 681554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0632 305 Gene3D - 33 162 - -
Mch2g0632 305 FunFam Syntaxin 132 201 301 - -
Mch2g0632 305 SMART tSNARE_6 203 270 IPR000727 -
Mch2g0632 305 PANTHER SYNTAXIN 41 290 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Mch2g0632 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Mch2g0632 305 CDD SNARE_syntaxin1-like 207 269 - -
Mch2g0632 305 SMART SynN_4 33 159 IPR006011 GO:0016020(InterPro)
Mch2g0632 305 CDD SynN 39 195 IPR006011 GO:0016020(InterPro)
Mch2g0632 305 Gene3D - 199 301 - -
Mch2g0632 305 Pfam Syntaxin 41 243 IPR006011 GO:0016020(InterPro)
Mch2g0632 305 SUPERFAMILY t-snare proteins 36 263 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Mch2g0632 305 Pfam SNARE domain 244 296 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0632 Mch-Chr2:4309381 Mch5g1220 Mch-Chr5:12042156 6.33E-103 dispersed
Mch2g0631 Mch-Chr2:4305016 Mch2g0632 Mch-Chr2:4309381 1.30E-136 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0632 K08486 - csv:101214355 515.768