Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0634 ATGCCAGCCGGGATTATGACACCGGCCAGAAACATGCCGTCGATGATTGGAAGGAATGGGAATAATGTTGCTGGATTTGGCTCATCTTCTGGACTTGCTCTTTCTCAGCCAAGCATGATGGACGGCCAGCTCCTCCCCTTAGACATGCCTCACAACACCTCCGAGAGCGACCTCGCTCGAATCCGAGACGACGACTTTGACAGCGCCACCAAATCCGGCAGCGACAACAACCATGAACTCGCCTCCGGCGACGACCAAGACCCTCGTCCCAACAAAAAGAAGCGCTACCACCGCCATACCCAACACCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAGTGTCCTCACCCGGATGACAAACAAAGGAAGGAATTAAGCAGGGAATTAGGGTTGGAGCCGTTACAAGTCAAATTTTGGTTCCAAAACAAACGCACTCAAATGAAGAATCAACATGAGCGGCATGAGAACACACAACTTCGAACAGAAAATGAGAAGCTTCGAGCCGATAACATGAGATACAGAGAAGCCCTTAGCAATGCTTCGTGCCCCAATTGTGGTGGCCCTACCGCTATTGGCGAAATGTCTTTTGATGAACATCATCTCAGGCTTGAAAATGCCCGTCTTCGTGAGGAGATCGATCGAATTTCAGCAATAGCTGCAAAATATGTGGGGAAGCCGGTGGTGAACTATCCTCTACTTTCTCCACCAGTTCCCTCTCGGCCACTAGAGTTGGGCATGGGGAACTTCGGGGGAGACATCTATGGCTCCGCGGGAGACCTGATAAGATCCATCAGCGCCCCCACCGAAGCGGATAAACCGATGATCATCGAGCTGGCGGTTGCAGCCATGGAAGAGCTGACTAGAATGGCTCAGATGGGCGAGCCGTTGTGGATGACAGCCCTGGATGGCTCCACCAGTGTGCTGAATGAAGATGAGTACTTGAGAACGTTTCCCCGAGGGATTGGGCCTAAGCCATCTGGGTTTAAATGTGAAGCCTCTCGTGAATCTGCTGTTGTCATTATGAACCACATTAACCTCGTTGAGATTCTCATGGACGTGAATCAATGGTCGACTTTGTTCTCTGGCATCGTGTCTAGAGCTATGACACTTGAAGTGTTGTCAACTGGAGTTGCTGGGAATTACAATGGAGCACTGCAAGTGATAACGTCGGAATTTCAAGTTCCATCACCATTGGTTCCGACCCGGGAAAGCTATTACGTTAGATATTGCAAACAGCATGCGGACGGGACGTGGGCAGTGGTGGATGTGTCGTTGGACGATCTGCGGCCTACTCCGGGGCTTAGATGCAGAAGAAGGCCTTCCGGATGTTTAATCCAAGAAATGCCAAATGGCTATTCAAAGGTCACATGGGTTGAGCATGTAGAGGTGGATGATAGAGGAGTTCATAATCTATACAAGCAGCTGGTAAGCTCTGGCCAAGCTTTTGGAGCCAAACGTTGGGTTACTACTTTAGACCGCCAATGTGAACGACTCGCCAGTGCCATGGCCACCAACATACCAACCGGTGATGTCGGAGTGATAACGAGTCAAGAGGGGAGAAAGAGCATGTTGAAACTGGCTGAGAGAATGGTGATAAGCTTCTGCGCTGGAGTGAGTGCCTCCACAACTCACACATGGACTACCCTGTCAGGTACCGGTGCAGATGATGTTCGCGTCATGACCCGAAAGAGCATCGACGACCCCGGAAGGCCTCCTGGTATAGTCCTCAGCGCTGCAACTTCCTTTTGGCTCCCTGTTCCACCCAAGCGAATCTTCGATTTCCTCCGGGATGAAAACTCTCGCAGCGAGTGGGACATTCTTTCGAATGGGGGAGTAGTTCAAGAAATGGCGCACATCGCCAACGGCCGCGACACTGGTAACTGTGTTTCACTGCTGCGGGTAAACAGCGCGAATTCAAGCCAAAGCAACATGCTAATTCTACAAGAAAGCTGCACGGACCCAACGGCGTCGTTCGTGATCTACGCTCCGGTGGACATAGTGGCAATGAACGTGGTGCTGAACGGCGGAGATCCGGATTACGTGGCACTTCTCCCCTCGGGTTTCGCGATTCTCCCGGACGGCGGCGGCGGGGAGGGTGGGTCACTGCTGACGGTTGCGTTTCAGATACTGGTGGACTCGGTGCCGACGGCGAAGCTCTCCCTGGGGTCGGTGGCGACGGTGAACAATCTAATTGCGTGTACGGTGGAGAGGATTAAAGCGTCATTATCATGCGACACTGCGTAG 2244 52.05 MPAGIMTPARNMPSMIGRNGNNVAGFGSSSGLALSQPSMMDGQLLPLDMPHNTSESDLARIRDDDFDSATKSGSDNNHELASGDDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPPVPSRPLELGMGNFGGDIYGSAGDLIRSISAPTEADKPMIIELAVAAMEELTRMAQMGEPLWMTALDGSTSVLNEDEYLRTFPRGIGPKPSGFKCEASRESAVVIMNHINLVEILMDVNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVITSEFQVPSPLVPTRESYYVRYCKQHADGTWAVVDVSLDDLRPTPGLRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCERLASAMATNIPTGDVGVITSQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKRIFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDPTASFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGGGGEGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCDTA 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4332703 4337776 + MC02g0532 Mch2g0634 681556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0634 747 SUPERFAMILY Bet v1-like 517 739 - -
Mch2g0634 747 MobiDBLite consensus disorder prediction 55 91 - -
Mch2g0634 747 SMART HOX_1 91 154 IPR001356 GO:0003677(InterPro)
Mch2g0634 747 CDD START_ArGLABRA2_like 272 496 - -
Mch2g0634 747 SUPERFAMILY Homeodomain-like 81 150 IPR009057 -
Mch2g0634 747 MobiDBLite consensus disorder prediction 34 102 - -
Mch2g0634 747 FunFam Homeobox-leucine zipper protein HDG1 80 166 - -
Mch2g0634 747 SMART START_1 277 497 IPR002913 GO:0008289(InterPro)
Mch2g0634 747 Gene3D - 327 496 IPR023393 -
Mch2g0634 747 Coils Coil 144 176 - -
Mch2g0634 747 Gene3D - 79 167 - -
Mch2g0634 747 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 72 744 IPR042160 -
Mch2g0634 747 CDD homeodomain 93 151 IPR001356 GO:0003677(InterPro)
Mch2g0634 747 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677(InterPro)
Mch2g0634 747 Pfam Homeodomain 93 149 IPR001356 GO:0003677(InterPro)
Mch2g0634 747 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch2g0634 747 ProSiteProfiles START domain profile. 268 500 IPR002913 GO:0008289(InterPro)
Mch2g0634 747 SUPERFAMILY Bet v1-like 268 499 - -
Mch2g0634 747 FunFam Homeobox-leucine zipper protein GLABRA 2 277 496 - -
Mch2g0634 747 Pfam START domain 278 497 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1771 Mch-Chr1:18089436 Mch2g0634 Mch-Chr2:4332703 0 dispersed
Mch2g0634 Mch-Chr2:4332703 Mch7g0709 Mch-Chr7:11725418 3.61E-275 dispersed
Mch11g1166 Mch-Chr11:8194781 Mch2g0634 Mch-Chr2:4332703 4.38E-135 wgd
Mch2g0634 Mch-Chr2:4332703 Mch3g1219 Mch-Chr3:15350213 0 wgd
Mch2g0634 Mch-Chr2:4332703 Mch4g0233 Mch-Chr4:1496817 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42892 PF01852 START 1.10E-57 CL0209 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0634 K09338 - csv:101214763 1405.96