Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0636 ATGGAGGTGTTCCTGATTTGGAGGCGTGGCCGTTGGGTCAAGACCAGTGTTCTGCTACTTGCATTGTTCTTTGGGATTTTGATGCCTTTAGGAGTGATGGGTATCTCTCGAAACAGTACGGGTTCGTCTTCGAATCCAAGTGTAGTGAATATTGGAGTTCTGTTCACTCTGGATTCGGTTATTGGAAGGTCTGCGCAGCCTGCAATTTTAGCTGCAGTGGATGATATCAATGCTGATAACACCATTCTTTCTGGAACGAAACTGAACCTTATCTTACACGACACAAACTGCAGCGGATTTCTTGGAACTGTGGAAGCCTTGCAGCTGATGGAAGATGAAGTAATTGCTGCTATCGGGCCACAATCGTCGGGAATCGCTCACGTCATCTCCCACGTTATTAACGAACTCCATGTACCGCTTCTATCATTTGGAGCTACAGATCCCACTTTGTCTGCACTACAATACCCATATTTTGTTCGGACTACACAGAGTGATTACTTCCAGATGAATGCAATTGCTGATCTGGTAGATCATTTTAAATGGAGAGAGGTCATTGCCATCTATGTAGATGATGATAATGGCAGAAGCGGGATATCAGCATTGGGCGATGCCTTGGCAAAGAAGCGAGCCAGGATCTCTTATAAGGCTGGCTTCTCTCCTGGATCCACCCAAAGCACAATTAGTGATTTGTTGATTGGAGTAAACCTCATGGAATCTCGGGTGTATATTGTACATGTTAATCCTGACACTGGTTTATCGATATTTTCGATTGCTAAGAAACTTCAGATGATGCGCAGTGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCTTTTCTTGATTCTTTTGAAACAAATAGTCCTGAAATAATGAATCAGTTACAAGGAGTTGTTGCTCTTCGTCACCACACACCAGACAGCGAACTGAAGAGAAACTTCATTTCCAAGTGGAAGAATCTAAAACACAAGAAGAGTCCAAACTTCAACTCATATGCACTCTATGCATACGACTCTGTTTGGTTAGCAGCCCGTGCTCTCGATACGTATATTAAAGAAGGCGGTAATATATCTTTCTCCAGTGACTCAAAGTTACGCGACAACAATGGAAGCATGCTGCACTTAACATCACTTCGAGTCTTTAATGGCGGCGAACAACTTCTGCAGACAATTACCAGAACAAACTTCACAGGTGTAAGTGGGAGGATTCAATTTGCTGATGGTAAAAATCTGATTCATCCAGCCTATGATATCCTGAACATTGGTGGAACCGGTTCCCGTAGAATTGGTTACTGGTCAAATTATTCTGGTCTATCAACTGTTGCACCAGAGGACTTGTATACAAAGCCTCCCAGTGCTTCCCCAAGTAATCTCTACAGTGTAATATGGCCCGGTGAAGCAACAACCACTCCTCGGGGATGGGTGTTCCCACACAACGGAAAACCGTTGCAAATCGTAGTTCCTTACCGTGTGAGTTACAAAGCCTTTGTGTCTAAAGACAAGAACCCTCCAGGAGTTAAAGGATATTGTATAGATGTCTTTGAAGCTGCCGTAAACTTATTGCCTTATCCAGTTCCTCACACATATATATTATATGGAGATGGAAAGGACACTCCTGAGTACAGCAATCTTGTATATGATGTTTCACAGAATAAATACGATGCAGCTGTTGGTGATATTACGATTGTAACGAACAGGACGAAGATTGTGGACTTCACACAACCATTTATGGAGTCGGGACTCGTCGTTGTTACTGTTGTCAAAGAGCAGAAGTCCAATCCATGGGCTTTTCTCAGGCCGTTTACGGTTCAAATGTGGGCTGTCACTGGAATATGCTTCATTTTTGTGGGAGCAGTTGTTTGGATTCTTGAGCACCGGACGAACGAAGAGTTCCGTGGTCCACCAAGGCAACAACTAATAACTATATTCTGGTTTAGTTTCTCAACAATGTTTTTTTCACACAAGGAAAACACCGTTAGCACCCTTGGACGGTTGGTGCTGATTATATGGCTCTTTGTTGTGTTGATTATCAATTCGAGCTACACAGCTAGTTTGACGTCGATCTTAACGGTACAGCAGCTATCGTCAAATATCGAAGGGATTGATAGCTTAATCTCTAGAACAGATGCCATTGGAGTTCAAGAGGGTTCATTTGCATTGAATTATCTGATTGATGAGCTGAATATAGCAGCATCTAGGATCATTAAATTGAGAAATCAGGAGGAATATGTTGATGCTCTTACGCGTGGATCGGCAGATGGCGGGGTAGCGGCCATCGTAGATGAGCTTCCTTACGTCGAGCTTTTCTTATCCAGCACCAATTGCGAGTTCAGGACGGTTGGGCAGGAGTTCACAAAAAGTGGATGGGGATTTGCATTCCAAAGGGACTCTCCTCTTGCAGTTGATTTATCAACAGCAATTCTTCAACTCTCAGAGAATGGTGATCTCCAAAAGATCCACGACAAATGGCTCTCACGAACCGAGTGTTCGACAAACGTCAACCAAGTCGACGTAAGCCAACTATCACTGAGCAGCTTTTGGGGACTGTTCCTAATATGTGGCATTGCTTGCTTTAGTGCTCTTCTGATATTCTTCTTTAGAGTCCTATTCCAATATCGAAGATTTACCCCTGAAACACAGCCCGAAGTCGACGATATCGAACCTGTTACTGTCAGGACGAGACGCCTCAGCCGTACAGCCAGCTTCATTCAATTTGTAGATAAAAAAGAAGCAGAGATCAAAGATAAAAAAAGAAAAACCAGTGATGCCAAACAAGCTAGCCATAGCTCAGAGAGCCACCTTGATTCGCCATCTTATTAG 2817 43.41 MEVFLIWRRGRWVKTSVLLLALFFGILMPLGVMGISRNSTGSSSNPSVVNIGVLFTLDSVIGRSAQPAILAAVDDINADNTILSGTKLNLILHDTNCSGFLGTVEALQLMEDEVIAAIGPQSSGIAHVISHVINELHVPLLSFGATDPTLSALQYPYFVRTTQSDYFQMNAIADLVDHFKWREVIAIYVDDDNGRSGISALGDALAKKRARISYKAGFSPGSTQSTISDLLIGVNLMESRVYIVHVNPDTGLSIFSIAKKLQMMRSGYVWIATDWLPSFLDSFETNSPEIMNQLQGVVALRHHTPDSELKRNFISKWKNLKHKKSPNFNSYALYAYDSVWLAARALDTYIKEGGNISFSSDSKLRDNNGSMLHLTSLRVFNGGEQLLQTITRTNFTGVSGRIQFADGKNLIHPAYDILNIGGTGSRRIGYWSNYSGLSTVAPEDLYTKPPSASPSNLYSVIWPGEATTTPRGWVFPHNGKPLQIVVPYRVSYKAFVSKDKNPPGVKGYCIDVFEAAVNLLPYPVPHTYILYGDGKDTPEYSNLVYDVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKEQKSNPWAFLRPFTVQMWAVTGICFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSNIEGIDSLISRTDAIGVQEGSFALNYLIDELNIAASRIIKLRNQEEYVDALTRGSADGGVAAIVDELPYVELFLSSTNCEFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSTNVNQVDVSQLSLSSFWGLFLICGIACFSALLIFFFRVLFQYRRFTPETQPEVDDIEPVTVRTRRLSRTASFIQFVDKKEAEIKDKKRKTSDAKQASHSSESHLDSPSY 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4344135 4349203 - MC02g0534 Mch2g0636 681558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0636 938 PIRSF IGluLR_plant 13 937 IPR017103 -
Mch2g0636 938 SUPERFAMILY Periplasmic binding protein-like II 458 824 - -
Mch2g0636 938 MobiDBLite consensus disorder prediction 912 928 - -
Mch2g0636 938 Gene3D - 68 412 - -
Mch2g0636 938 MobiDBLite consensus disorder prediction 912 938 - -
Mch2g0636 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 62 78 - -
Mch2g0636 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 122 150 - -
Mch2g0636 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 335 347 - -
Mch2g0636 938 SMART GluR_14 483 825 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Mch2g0636 938 Pfam Receptor family ligand binding region 65 422 IPR001828 -
Mch2g0636 938 Pfam Ligated ion channel L-glutamate- and glycine-binding site 487 584 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Mch2g0636 938 FunFam Glutamate receptor 593 723 - -
Mch2g0636 938 CDD PBP1_GABAb_receptor_plant 50 441 IPR044440 -
Mch2g0636 938 Gene3D - 476 592 - -
Mch2g0636 938 Coils Coil 905 925 - -
Mch2g0636 938 Gene3D - 593 720 - -
Mch2g0636 938 FunFam Glutamate receptor 164 323 - -
Mch2g0636 938 Pfam Ligand-gated ion channel 602 856 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Mch2g0636 938 CDD GluR_Plant 480 823 - -
Mch2g0636 938 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 49 915 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Mch2g0636 938 Gene3D - 164 437 - -
Mch2g0636 938 Gene3D - 721 827 - -
Mch2g0636 938 FunFam Glutamate receptor 719 827 - -
Mch2g0636 938 FunFam Glutamate receptor 477 593 - -
Mch2g0636 938 SUPERFAMILY Periplasmic binding protein-like I 43 474 IPR028082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0043 Mch-Chr11:274252 Mch2g0636 Mch-Chr2:4344135 0 dispersed
Mch1g1654 Mch-Chr1:17431956 Mch2g0636 Mch-Chr2:4344135 0 dispersed
Mch2g0636 Mch-Chr2:4344135 Mch4g0391 Mch-Chr4:2484916 4.82E-291 dispersed
Mch2g0636 Mch-Chr2:4344135 Mch2g0637 Mch-Chr2:4357150 1.54E-304 tandem
Mch8g1245 Mch-Chr8:8952723 Mch2g0636 Mch-Chr2:4344135 5.49E-145 transposed
Mch2g0636 Mch-Chr2:4344135 Mch4g0236 Mch-Chr4:1521252 2.44E-307 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0636 K05387 - csv:101215485 1573.53