Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0654 CGGATGGTAATTGTATCACACATGCTTCCTGTAAAAGCAGAGCAAAGAGATGATGGAAATTGGAGTTTCAGTTGGGATGAGGATTCTTTGCTTTTCCAGATGAAGGATGGTTTTCCACAACAGATGGTCGTTTTTTACATCGGATGTCTGAGTTTGACAGTCGAAATTCATGAAGACAAACAACACGAGGTGTCCAAGACATTGCTAGAAGAATTCAACTGCTTTCCTACATTTTTGCCTCGTGAAATCTTGGACAAGTTTTACCATTGTTTCTGCAAGAGGTATCTGTGGTCTCTTTTCCATGACATGTTGCCTTTCTCTGTTGAGCACTCAGATCGGCCTTCGTGGGATGCGTATGTTTCAGCGAATATGTCGTTTTCGAAAAGAGTGATGGAAGTAGCTAACCCAGAACAAGATTATATTTGGATCCACGATTACCATTTAATGCTGCTTCCGTGCTTCTTAAGAGAGAGCTTCATCCGGATGAAGCTAGGATTTTTTCTTCACACCCCATTTCCTCCATCTGATATCTACCTAGCTCTTTCTGTAAGAGAAGAAATACTCACGTCTTTGCTGAACTGTGATGTCATCGGGTTCCACACGTATGATTACGCTCGACATTTCCTTTCGTGTTGCAGCCGAATTCTGGGCCTAGAACATAAGCTAGAGAAAGGCTTCCTTGAATTGGAGTACTATGGAAGGACTGTCAGGATAAAAGTTATGCCAGTTGGGATTCATATGGGCAGAATTGAGTCAATGATGAAAAGGGTAGAAGAGGATTCTCAGGTAGAGACTGTTATTAAAGATTACATTACTGGAAAGACGCTCATTTTAGGCATAGATGATGTCGACGTTTTCAAGGGTATCGATTTAAAATTTCTTGCAATGGAACACATGCTAATAGAGCGTCCTTATGTGCGGGGAACAGTCGTATTAGTCCAGATAATGAACCCTGCCAGAGGGAAAGGGATATATCATGATCAAATACTAGCTACGATAAGGGAAACCACCGAAAGAATAAACAAAGAATTCGAGCAGCCAAATTACCAACCAATCGTTCTCCTTGAATGTCCAGTTAGCACCAAAGAGAAGTTCTACTGTTATAGCATGGCCGAGTGCCTTGTTGTTACACCTTTAACGGATGGGATGAATCTTTATCCTTATGAATACATTGCCTCTAGACAGCATCAGGCCAGAAAGAGCATGTTAGTGATATCAGAATCTATGGGGTGTTCTTTATCACTGAGCGGAGCACTGCGTGTCAATCCATGGAATATCAGAGAAATTGCCGAGAAAATATACGAAGCAATTTCAATGTATGATTCAGAAAAACAGTCACGACATACGAAGCATTTTGAGTATATTAGCAACCATGATGTGGTTCACTGGTCAGCAAGTTTCTTTGAAGACATGAAGAGAACTTGGGATGAACAATGCCACAGGATATTCTGGGGAGTTAATCAAGGATTTCACTTCAGGGTTTTGTCTACTGATCTCATTTCTGAAAGGCTTCCATTAAATACCATGGAATTAGACTACAGAAAGGCAAAGACAAGGGCCATTCTTTTGGACTATGATAGCACATTTATTCCCCCATACTCTGCGGATAAGTCTCCAAGTGAGCGTATTATCTCAGCCCTCAACGATCTTTGTGCAGATAGTCTGAATCAAGTTGTAGTTGTTAGCGGAAGAGGAAGGGACAGCTTGAACAAGTGGTTCAAGTCTTGCAAAAATCTTGTAATAGCAGCAGAACATGGATTCTTCTTGAGGTTTCCAGGAAATGAAGAGTGGGAAACCATTGGTCAGAATTTGGATTTGAGTTGGATGGAGTTAGCAGAACGCACCATGGAATCATATACTGCTGCTACAGACGGTTCTTTCATCGAAAGGGAAGAACGCTCTCTGGTGTGGAACTATCAAAATGCAGACCCACGATTTGGATCTCTCCAAGCTATTGAGCTTGTGGATAATCTATCAGATGTTTTGGCCAATGATCCTGTTAGTATCAAGAGTGGAAATTACGTTGTGGAAGCAAAATCTCAGGGAGTCAACAAAGGCACAGTTGCAAAGATGATCCTCGAATCCATGGCAAAGAAAGAAGCGAAAGGGGACGAGTTTATCATGTGCATAGGCGATGACAAATTTGATGACGACATGTTTGAAATCCTTAATGCAGCAACAGTAGAAGGCAAACTTTCATCCCGCAGTCCAGTTTTCATATGTACTATTAATGAAAATCCAACCAAGGCCAAATATTATTTGAAAGGCACAAATGAAGTGATGGACGTTCTTGAACTTTTGGCTTTAGCATCC 2313 41.29 RMVIVSHMLPVKAEQRDDGNWSFSWDEDSLLFQMKDGFPQQMVVFYIGCLSLTVEIHEDKQHEVSKTLLEEFNCFPTFLPREILDKFYHCFCKRYLWSLFHDMLPFSVEHSDRPSWDAYVSANMSFSKRVMEVANPEQDYIWIHDYHLMLLPCFLRESFIRMKLGFFLHTPFPPSDIYLALSVREEILTSLLNCDVIGFHTYDYARHFLSCCSRILGLEHKLEKGFLELEYYGRTVRIKVMPVGIHMGRIESMMKRVEEDSQVETVIKDYITGKTLILGIDDVDVFKGIDLKFLAMEHMLIERPYVRGTVVLVQIMNPARGKGIYHDQILATIRETTERINKEFEQPNYQPIVLLECPVSTKEKFYCYSMAECLVVTPLTDGMNLYPYEYIASRQHQARKSMLVISESMGCSLSLSGALRVNPWNIREIAEKIYEAISMYDSEKQSRHTKHFEYISNHDVVHWSASFFEDMKRTWDEQCHRIFWGVNQGFHFRVLSTDLISERLPLNTMELDYRKAKTRAILLDYDSTFIPPYSADKSPSERIISALNDLCADSLNQVVVVSGRGRDSLNKWFKSCKNLVIAAEHGFFLRFPGNEEWETIGQNLDLSWMELAERTMESYTAATDGSFIEREERSLVWNYQNADPRFGSLQAIELVDNLSDVLANDPVSIKSGNYVVEAKSQGVNKGTVAKMILESMAKKEAKGDEFIMCIGDDKFDDDMFEILNAATVEGKLSSRSPVFICTINENPTKAKYYLKGTNEVMDVLELLALAS 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4478704 4481245 - MC02g0552 Mch2g0654 681576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0654 771 NCBIfam trehalose-phosphatase 516 768 IPR003337 GO:0005992(InterPro)
Mch2g0654 771 Pfam Trehalose-phosphatase 522 756 IPR003337 GO:0005992(InterPro)
Mch2g0654 771 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 648 771 - -
Mch2g0654 771 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 768 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Mch2g0654 771 Gene3D - 521 726 IPR023214 -
Mch2g0654 771 Gene3D - 602 681 - -
Mch2g0654 771 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 1 476 - -
Mch2g0654 771 FunFam Alpha,alpha-trehalose-phosphate synthase 253 456 - -
Mch2g0654 771 Gene3D Glycogen Phosphorylase B; 253 456 - -
Mch2g0654 771 Pfam Glycosyltransferase family 20 2 472 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Mch2g0654 771 CDD HAD_TPP 520 761 - -
Mch2g0654 771 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 518 635 - -
Mch2g0654 771 FunFam Trehalose-6-phosphate synthase 8 1 252 - -
Mch2g0654 771 SUPERFAMILY HAD-like 519 768 IPR036412 -
Mch2g0654 771 CDD GT20_TPS 1 472 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Mch2g0654 771 NCBIfam HAD-IIB family hydrolase 521 726 IPR006379 -
Mch2g0654 771 Gene3D Glycogen Phosphorylase B; 1 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0654 K16055 - - vvi:100265140 890.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0654 Mch-Chr2:4478704 Mch6g0163 Mch-Chr6:1098180 8.27E-282 dispersed
Mch2g0654 Mch-Chr2:4478704 Mch4g0135 Mch-Chr4:891787 6.65e-319 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g1953 . 21 573 Trehalose Biosynthesis Gene Families AT4G24040 57.5 1.1e-193 673.3
Mch6g1952 . 42 594 Trehalose Biosynthesis Gene Families AT4G24040 57.3 2.6e-190 662.1
Mch4g0135 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 78.0 0.0e+00 1374.0
Mch1g1957 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1349.7
Mch10g1678 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.3 0.0e+00 1147.1
Mch9g1356 . 1 848 Trehalose Biosynthesis Gene Families AT1G06410 64.0 0.0e+00 1136.7
Mch9g2224 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.6 0.0e+00 1097.8
Mch6g0163 . 1 852 Trehalose Biosynthesis Gene Families AT1G06410 59.9 2.2e-304 1041.6
Mch2g0654 . 1 771 Trehalose Biosynthesis Gene Families AT1G06410 53.6 4.7e-251 864.4
Mch11g0982 . 87 698 Trehalose Biosynthesis Gene Families AT1G16980 65.3 3.6e-246 847.8
Mch3g1040 . 78 695 Trehalose Biosynthesis Gene Families AT1G16980 63.5 7.7e-241 830.1
Mch9g2224 . 1 861 Trehalose Biosynthesis Gene Families AT1G23870 74.9 0.0e+00 1354.3
Mch6g0163 . 1 856 Trehalose Biosynthesis Gene Families AT1G23870 67.1 0.0e+00 1221.5
Mch9g1356 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 61.8 0.0e+00 1126.3
Mch10g1678 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.6 0.0e+00 1109.0
Mch1g1957 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.2 0.0e+00 1104.4
Mch4g0135 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 61.1 0.0e+00 1098.2
Mch9g2224 . 1 861 Trehalose Biosynthesis Gene Families AT1G60140 73.7 0.0e+00 1341.6
Mch6g0163 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 67.4 0.0e+00 1209.5
Mch9g1356 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 61.3 0.0e+00 1085.9
Mch10g1678 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.4 0.0e+00 1084.7
Mch4g0135 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 60.8 0.0e+00 1079.3
Mch1g1957 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 59.9 3.8e-314 1073.5
Mch9g1356 . 1 853 Trehalose Biosynthesis Gene Families AT1G68020 78.8 0.0e+00 1411.0
Mch10g1678 . 1 845 Trehalose Biosynthesis Gene Families AT1G68020 71.2 0.0e+00 1261.1
Mch1g1957 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.0 0.0e+00 1160.2
Mch4g0135 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 63.2 0.0e+00 1140.9
Mch9g2224 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 64.3 0.0e+00 1122.1
Mch6g0163 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 61.4 0.0e+00 1075.8
Mch9g2224 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.9 0.0e+00 1206.4
Mch6g0163 . 1 856 Trehalose Biosynthesis Gene Families AT1G70290 63.6 0.0e+00 1110.9
Mch9g1356 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 57.4 2.6e-294 1008.1
Mch4g0135 . 1 847 Trehalose Biosynthesis Gene Families AT1G70290 58.4 7.4e-294 1006.5
Mch1g1957 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.0 7.0e-292 1000.0
Mch10g1678 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.7 8.2e-285 976.5
Mch11g0982 . 1 947 Trehalose Biosynthesis Gene Families AT1G78580 77.8 0.0e+00 1481.8
Mch3g1040 . 1 932 Trehalose Biosynthesis Gene Families AT1G78580 73.6 0.0e+00 1373.2
Mch9g2224 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.7 1.0e-309 1059.3
Mch6g0163 . 11 838 Trehalose Biosynthesis Gene Families AT2G18700 59.9 1.4e-298 1022.3
Mch10g1678 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.5 5.2e-298 1020.4
Mch1g1957 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 58.8 9.9e-297 1016.1
Mch4g0135 . 24 841 Trehalose Biosynthesis Gene Families AT2G18700 58.5 2.5e-292 1001.5
Mch9g1356 . 1 848 Trehalose Biosynthesis Gene Families AT2G18700 57.1 3.8e-288 987.6
Mch10g1678 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.8 0.0e+00 1380.9
Mch9g1356 . 1 846 Trehalose Biosynthesis Gene Families AT4G17770 70.7 0.0e+00 1257.7
Mch1g1957 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 66.2 0.0e+00 1174.1
Mch4g0135 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.1 0.0e+00 1157.5
Mch9g2224 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 64.8 0.0e+00 1151.7
Mch6g0163 . 1 834 Trehalose Biosynthesis Gene Families AT4G17770 62.8 0.0e+00 1104.4
Mch11g0982 . 95 945 Trehalose Biosynthesis Gene Families AT4G27550 61.3 9.3e-302 1032.7
Mch3g1040 . 91 926 Trehalose Biosynthesis Gene Families AT4G27550 59.4 9.0e-289 989.6
Mch11g0982 . 1 947 Trehalose Biosynthesis Gene Families AT1G78580 77.8 0.0e+00 1481.8
Mch3g1040 . 1 932 Trehalose Biosynthesis Gene Families AT1G78580 73.6 0.0e+00 1373.2
Mch11g0982 . 87 698 Trehalose Biosynthesis Gene Families AT1G16980 65.3 3.6e-246 847.8
Mch3g1040 . 78 695 Trehalose Biosynthesis Gene Families AT1G16980 63.5 7.7e-241 830.1
Mch11g0982 . 85 623 Trehalose Biosynthesis Gene Families AT1G17000 62.0 2.9e-194 675.6
Mch3g1040 . 92 610 Trehalose Biosynthesis Gene Families AT1G17000 60.5 3.1e-188 655.6
Mch11g0982 . 95 945 Trehalose Biosynthesis Gene Families AT4G27550 61.3 9.3e-302 1032.7
Mch3g1040 . 91 926 Trehalose Biosynthesis Gene Families AT4G27550 59.4 9.0e-289 989.6
Mch10g1678 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.8 0.0e+00 1380.9
Mch9g1356 . 1 846 Trehalose Biosynthesis Gene Families AT4G17770 70.7 0.0e+00 1257.7
Mch1g1957 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 66.2 0.0e+00 1174.1
Mch4g0135 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.1 0.0e+00 1157.5
Mch9g2224 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 64.8 0.0e+00 1151.7
Mch6g0163 . 1 834 Trehalose Biosynthesis Gene Families AT4G17770 62.8 0.0e+00 1104.4
Mch9g1356 . 1 853 Trehalose Biosynthesis Gene Families AT1G68020 78.8 0.0e+00 1411.0
Mch10g1678 . 1 845 Trehalose Biosynthesis Gene Families AT1G68020 71.2 0.0e+00 1261.1
Mch1g1957 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.0 0.0e+00 1160.2
Mch4g0135 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 63.2 0.0e+00 1140.9
Mch9g2224 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 64.3 0.0e+00 1122.1
Mch6g0163 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 61.4 0.0e+00 1075.8
Mch4g0135 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 78.0 0.0e+00 1374.0
Mch1g1957 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1349.7
Mch10g1678 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.3 0.0e+00 1147.1
Mch9g1356 . 1 848 Trehalose Biosynthesis Gene Families AT1G06410 64.0 0.0e+00 1136.7
Mch9g2224 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.6 0.0e+00 1097.8
Mch6g0163 . 1 852 Trehalose Biosynthesis Gene Families AT1G06410 59.9 2.2e-304 1041.6
Mch2g0654 . 1 771 Trehalose Biosynthesis Gene Families AT1G06410 53.6 4.7e-251 864.4
Mch9g2224 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.9 0.0e+00 1206.4
Mch6g0163 . 1 856 Trehalose Biosynthesis Gene Families AT1G70290 63.6 0.0e+00 1110.9
Mch9g1356 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 57.4 2.6e-294 1008.1
Mch4g0135 . 1 847 Trehalose Biosynthesis Gene Families AT1G70290 58.4 7.4e-294 1006.5
Mch1g1957 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.0 7.0e-292 1000.0
Mch10g1678 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.7 8.2e-285 976.5
Mch9g2224 . 1 861 Trehalose Biosynthesis Gene Families AT1G23870 74.9 0.0e+00 1354.3
Mch6g0163 . 1 856 Trehalose Biosynthesis Gene Families AT1G23870 67.1 0.0e+00 1221.5
Mch9g1356 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 61.8 0.0e+00 1126.3
Mch10g1678 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.6 0.0e+00 1109.0
Mch1g1957 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.2 0.0e+00 1104.4
Mch4g0135 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 61.1 0.0e+00 1098.2
Mch9g2224 . 1 861 Trehalose Biosynthesis Gene Families AT1G60140 73.7 0.0e+00 1341.6
Mch6g0163 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 67.4 0.0e+00 1209.5
Mch9g1356 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 61.3 0.0e+00 1085.9
Mch10g1678 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.4 0.0e+00 1084.7
Mch4g0135 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 60.8 0.0e+00 1079.3
Mch1g1957 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 59.9 3.8e-314 1073.5
Mch9g2224 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.7 1.0e-309 1059.3
Mch6g0163 . 11 838 Trehalose Biosynthesis Gene Families AT2G18700 59.9 1.4e-298 1022.3
Mch10g1678 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.5 5.2e-298 1020.4
Mch1g1957 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 58.8 9.9e-297 1016.1
Mch4g0135 . 24 841 Trehalose Biosynthesis Gene Families AT2G18700 58.5 2.5e-292 1001.5
Mch9g1356 . 1 848 Trehalose Biosynthesis Gene Families AT2G18700 57.1 3.8e-288 987.6
Mch6g1953 . 21 573 Trehalose Biosynthesis Gene Families AT4G24040 57.5 1.1e-193 673.3
Mch6g1952 . 42 594 Trehalose Biosynthesis Gene Families AT4G24040 57.3 2.6e-190 662.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001233 1 5 3 3 2 2 0 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 3 2 3 3 73