Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0685 ATGAAATTCGAAGAATGGAACCTGAAGCAACAGTCGGAACAGATATGCAGGACTATTGAGGTTGATAAGATTGATCACCATCGCAGTGTTTCACCTGTGGTCGTGATGGAAGCTTCCGAAGACTGCGAGAGCGATGGCGACGGCCTCTATATCCCACCCCTCAACTTTTCCATGGTTGATAATGGCATTTTTCGCTCCGGCTTCCCTGACTCTGCTAACTTCTCCTTCCTCCAAACCCTAGGCCTCCGCTCCATTATATGTCTATGTCCGGAGCCGTATCCGGAGCACAACATGGAGTTCCTCAAGTCGAACGAGATTAGATTGTTTCAATTTGGAATTGAGAGCTATAAGGTGCGTTTTCAGTTAAAATGCTATTGTTATATTAATATTGCTATTTGTATTCAGGAGCCTTTTGTGAGCATCCCAGATGATAAGATTCGTGAAGCACTGAAAGTCGTCCTTGACGCAAGGAATCATCCAGTTCTCATACACTGCAAGAGAGGAAAGCATCGAACAGGTTGTCTTGTAGGATGCCTAAGAAAATTGCAGAGGTGGTGCCTCACTTCCGTGTTTGATGAGTACCAGAGATTTGCAGCTGCAAAAGCTAGAGTTGCAGACCAGAGGTTTATGGAGTTGTTTGATATCTCTAGCTTGAAGCATCTGCCCATGTCATTCTCATGCTCAAAGAGGTGA 693 45.02 MKFEEWNLKQQSEQICRTIEVDKIDHHRSVSPVVVMEASEDCESDGDGLYIPPLNFSMVDNGIFRSGFPDSANFSFLQTLGLRSIICLCPEPYPEHNMEFLKSNEIRLFQFGIESYKVRFQLKCYCYINIAICIQEPFVSIPDDKIREALKVVLDARNHPVLIHCKRGKHRTGCLVGCLRKLQRWCLTSVFDEYQRFAAAKARVADQRFMELFDISSLKHLPMSFSCSKR 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4675647 4679898 - MC02g0581 Mch2g0685 681607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0685 230 Gene3D Protein tyrosine phosphatase superfamily 50 217 IPR029021 -
Mch2g0685 230 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 51 215 IPR029021 -
Mch2g0685 230 FunFam probable tyrosine-protein phosphatase At1g05000 49 217 - -
Mch2g0685 230 Pfam Tyrosine phosphatase family 50 220 IPR004861 -
Mch2g0685 230 PRINTS Plant and fungal dual specificity phosphatase signature 141 155 IPR020428 GO:0016791(InterPro)
Mch2g0685 230 PRINTS Plant and fungal dual specificity phosphatase signature 87 100 IPR020428 GO:0016791(InterPro)
Mch2g0685 230 PRINTS Plant and fungal dual specificity phosphatase signature 50 67 IPR020428 GO:0016791(InterPro)
Mch2g0685 230 PRINTS Plant and fungal dual specificity phosphatase signature 106 120 IPR020428 GO:0016791(InterPro)
Mch2g0685 230 PANTHER TYROSINE-PROTEIN PHOSPHATASE 33 223 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Mch2g0685 230 CDD PFA-DSP_Siw14 49 214 - -
Mch2g0685 230 ProSiteProfiles Dual specificity protein phosphatase domain profile. 55 227 IPR020422 GO:0006470(InterPro)
Mch2g0685 230 ProSitePatterns Tyrosine specific protein phosphatases active site. 163 173 IPR016130 GO:0016311(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0685 K18045 - - csv:101222170 359.762
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g1423 Mch-Chr6:12780133 Mch2g0685 Mch-Chr2:4675647 3.11E-71 transposed
Mch2g0685 Mch-Chr2:4675647 Mch4g0093 Mch-Chr4:621199 1.08E-109 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch11g1552 . 86 376 Protein tyrosine phosphatase (PTP) family AT1G71860 66.2 1.7e-111 399.4
Mch1g0184 . 21 920 Protein tyrosine phosphatase (PTP) family AT5G23720 64.5 0.0e+00 1077.4
Mch4g0086 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 1.2e-71 266.2
Mch9g1831 . 96 373 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 5.3e-114 407.5
Mch9g1401 . 20 277 Protein tyrosine phosphatase (PTP) family AT3G10940 66.4 2.7e-102 368.6
Mch8g1510 . 254 702 Protein tyrosine phosphatase (PTP) family AT3G01510 72.2 1.8e-201 698.7
Mch2g0685 . 9 231 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 9.5e-78 287.0
Mch4g0093 . 10 243 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 9.8e-75 276.9
Mch8g3193 . 17 264 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 1.2e-80 297.0
Mch8g3193 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 8.2e-47 183.7
Mch2g0685 . 43 230 Protein tyrosine phosphatase (PTP) family AT4G03960 68.6 2.1e-72 268.9
Mch4g0093 . 43 242 Protein tyrosine phosphatase (PTP) family AT4G03960 62.5 4.0e-68 254.6
Mch6g1423 . 5 185 Protein tyrosine phosphatase (PTP) family AT4G03960 53.6 4.3e-54 208.0
Mch6g1423 . 7 216 Protein tyrosine phosphatase (PTP) family AT3G02800 67.0 4.0e-79 291.2
Mch2g0685 . 40 224 Protein tyrosine phosphatase (PTP) family AT3G02800 55.1 2.2e-53 205.7
Mch9g1591 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 66.7 1.8e-63 241.1
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g0722 . 38 619 Protein tyrosine phosphatase (PTP) family AT3G19420 66.1 6.3e-221 763.8
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G19420 61.8 1.7e-197 686.0
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch10g1638 . 10 319 Protein tyrosine phosphatase (PTP) family AT2G35320 61.9 9.2e-112 400.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001007 2 3 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 1 2 2 2 2 2 2 2 7 6 2 83