Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0685 ATGAAATTCGAAGAATGGAACCTGAAGCAACAGTCGGAACAGATATGCAGGACTATTGAGGTTGATAAGATTGATCACCATCGCAGTGTTTCACCTGTGGTCGTGATGGAAGCTTCCGAAGACTGCGAGAGCGATGGCGACGGCCTCTATATCCCACCCCTCAACTTTTCCATGGTTGATAATGGCATTTTTCGCTCCGGCTTCCCTGACTCTGCTAACTTCTCCTTCCTCCAAACCCTAGGCCTCCGCTCCATTATATGTCTATGTCCGGAGCCGTATCCGGAGCACAACATGGAGTTCCTCAAGTCGAACGAGATTAGATTGTTTCAATTTGGAATTGAGAGCTATAAGGTGCGTTTTCAGTTAAAATGCTATTGTTATATTAATATTGCTATTTGTATTCAGGAGCCTTTTGTGAGCATCCCAGATGATAAGATTCGTGAAGCACTGAAAGTCGTCCTTGACGCAAGGAATCATCCAGTTCTCATACACTGCAAGAGAGGAAAGCATCGAACAGGTTGTCTTGTAGGATGCCTAAGAAAATTGCAGAGGTGGTGCCTCACTTCCGTGTTTGATGAGTACCAGAGATTTGCAGCTGCAAAAGCTAGAGTTGCAGACCAGAGGTTTATGGAGTTGTTTGATATCTCTAGCTTGAAGCATCTGCCCATGTCATTCTCATGCTCAAAGAGGTGA 693 45.02 MKFEEWNLKQQSEQICRTIEVDKIDHHRSVSPVVVMEASEDCESDGDGLYIPPLNFSMVDNGIFRSGFPDSANFSFLQTLGLRSIICLCPEPYPEHNMEFLKSNEIRLFQFGIESYKVRFQLKCYCYINIAICIQEPFVSIPDDKIREALKVVLDARNHPVLIHCKRGKHRTGCLVGCLRKLQRWCLTSVFDEYQRFAAAKARVADQRFMELFDISSLKHLPMSFSCSKR 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4675647 4679898 - MC02g0581 Mch2g0685 681607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0685 230 Gene3D Protein tyrosine phosphatase superfamily 50 217 IPR029021 -
Mch2g0685 230 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 51 215 IPR029021 -
Mch2g0685 230 FunFam probable tyrosine-protein phosphatase At1g05000 49 217 - -
Mch2g0685 230 Pfam Tyrosine phosphatase family 50 220 IPR004861 -
Mch2g0685 230 PRINTS Plant and fungal dual specificity phosphatase signature 141 155 IPR020428 GO:0016791(InterPro)
Mch2g0685 230 PRINTS Plant and fungal dual specificity phosphatase signature 87 100 IPR020428 GO:0016791(InterPro)
Mch2g0685 230 PRINTS Plant and fungal dual specificity phosphatase signature 50 67 IPR020428 GO:0016791(InterPro)
Mch2g0685 230 PRINTS Plant and fungal dual specificity phosphatase signature 106 120 IPR020428 GO:0016791(InterPro)
Mch2g0685 230 PANTHER TYROSINE-PROTEIN PHOSPHATASE 33 223 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Mch2g0685 230 CDD PFA-DSP_Siw14 49 214 - -
Mch2g0685 230 ProSiteProfiles Dual specificity protein phosphatase domain profile. 55 227 IPR020422 GO:0006470(InterPro)
Mch2g0685 230 ProSitePatterns Tyrosine specific protein phosphatases active site. 163 173 IPR016130 GO:0016311(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g1423 Mch-Chr6:12780133 Mch2g0685 Mch-Chr2:4675647 3.11E-71 transposed
Mch2g0685 Mch-Chr2:4675647 Mch4g0093 Mch-Chr4:621199 1.08E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0685 K18045 - csv:101222170 359.762