Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch2g0689 | ATGCCAGATAATCTGCAAGTTCAGAGGAATGCTGTTCCTAACCAATCCCCTGATATCTCCGAGGCGCTTTGGCGGTTGGAAATCGGTGATAATCAGGATGGAGGTGACGCGGAAGAATCAAGCCCTTACCCCGATCGACCCGGCGAACCTGACTGCTTATATTATATGAGAACTGGCTCTTGTAGCTATGGAAGTAATTGTCGTTTTAATCATCCTGTCTACGTTGCGCAGGGTGCTCTGTATAATGGGGAACTTCCAGAAAGAATTGGGCAACCCGACTGTGAGTATTTTCTGAAGACGGGGACCTGTAAATATGGAGGATCCTGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCAGTTACATTTAATATATTAGGTCTTCCCATGCGACAGGAAGAAAAGTCCTGTCCTTATTACTTGCGAACTGGGTCGTGTAAATTTGGAGTTTCATGTAAGTTCAATCATCCCCAGCCATCATCGGTTGGAAATATGTTACCTCAAGCTAGACCTGGTGCCTTGGGGTCTGCTGGCACTCCATTCATGCCTTCATCTGGTTTACCTTATTCTGGTGGAATTCCTGCATGGTCATTGCCTAGAGTACAATATATGCCCGGTCCATGTGTACAAGGCCAACAATCTTATGTACCCGTCTTGGTTTCTCCATCACAGGGTGCCATAGCTGCACAAGACTGGAACACTTACATGGGCAATGTCAGTCCTGTTCTTCCCAATCTTGGTTATGGTTCTGTCAATTTGGATGACTCATATTCTAATGGGCATTTGGCCTTATCAACATCAACTCCAGCGCTACCTGATCGACCTGATCAACCAGAATGCCGTTATTTTATGAACAACGGAACGTGCAAATATGGATCTGATTGCAAGTTCCATCATCCGAAACAAAGAATTGCACAATCCGCAACAAATGCACTTGGGCTGCCTTCAAGACCCGGGCAAGCTGTATGTTCATACTACGGTATGTATGGGCTCTGCAAGTATGGCCCCAGTTGTAAATTTGACCATCCATCTGCAACATATCCTTATAATTATGGCTTCACTCTGCCTGTGCTTGATTCATCTTTTCTAAAGTACCCCAGCAACAACTTATCAATATCCTCACACGAAACCTCGGCCCAGACGTTATCTAAATCTTCTGAATGGGTCCAGAAAGCTGATGCTTCAAACAACAAACGCCGAACTACGGACGCAAAAGTTGTAGACAACACAGCTGAAGAGGCGACCTCAGTTTCATCCTCATTACCACCAGGGGGTTCAGAAAGTTTACAAGATCAATCTGGTTGA | 1311 | 45.46 | MPDNLQVQRNAVPNQSPDISEALWRLEIGDNQDGGDAEESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVYVAQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVTFNILGLPMRQEEKSCPYYLRTGSCKFGVSCKFNHPQPSSVGNMLPQARPGALGSAGTPFMPSSGLPYSGGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPSQGAIAAQDWNTYMGNVSPVLPNLGYGSVNLDDSYSNGHLALSTSTPALPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNALGLPSRPGQAVCSYYGMYGLCKYGPSCKFDHPSATYPYNYGFTLPVLDSSFLKYPSNNLSISSHETSAQTLSKSSEWVQKADASNNKRRTTDAKVVDNTAEEATSVSSSLPPGGSESLQDQSG | 436 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 4718607 | 4722568 | + | MC02g0584 | Mch2g0689 | 681611 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch2g0689 | 436 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 91 | 115 | IPR000571 | GO:0046872(InterPro) | |
| Mch2g0689 | 436 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 321 | 345 | IPR000571 | GO:0046872(InterPro) | |
| Mch2g0689 | 436 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 278 | 303 | IPR000571 | GO:0046872(InterPro) | |
| Mch2g0689 | 436 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 47 | 72 | IPR000571 | GO:0046872(InterPro) | |
| Mch2g0689 | 436 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 137 | 160 | IPR000571 | GO:0046872(InterPro) | |
| Mch2g0689 | 436 | PANTHER | PROTEIN PHOSPHATASE RELATED | 16 | 347 | IPR050974 | GO:0003729(PANTHER) | |
| Mch2g0689 | 436 | ProSiteProfiles | Zinc finger C3H1-type profile. | 319 | 347 | IPR000571 | GO:0046872(InterPro) | |
| Mch2g0689 | 436 | SUPERFAMILY | CCCH zinc finger | 93 | 117 | IPR036855 | GO:0046872(InterPro) | |
| Mch2g0689 | 436 | SUPERFAMILY | CCCH zinc finger | 51 | 73 | IPR036855 | GO:0046872(InterPro) | |
| Mch2g0689 | 436 | ProSiteProfiles | Zinc finger C3H1-type profile. | 276 | 304 | IPR000571 | GO:0046872(InterPro) | |
| Mch2g0689 | 436 | ProSiteProfiles | Zinc finger C3H1-type profile. | 133 | 161 | IPR000571 | GO:0046872(InterPro) | |
| Mch2g0689 | 436 | SUPERFAMILY | CCCH zinc finger | 132 | 161 | IPR036855 | GO:0046872(InterPro) | |
| Mch2g0689 | 436 | ProSiteProfiles | Zinc finger C3H1-type profile. | 88 | 116 | IPR000571 | GO:0046872(InterPro) | |
| Mch2g0689 | 436 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Mch2g0689 | 436 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Mch2g0689 | 436 | MobiDBLite | consensus disorder prediction | 395 | 409 | - | - | |
| Mch2g0689 | 436 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872(InterPro) | |
| Mch2g0689 | 436 | MobiDBLite | consensus disorder prediction | 410 | 436 | - | - | |
| Mch2g0689 | 436 | SUPERFAMILY | CCCH zinc finger | 322 | 347 | IPR036855 | GO:0046872(InterPro) | |
| Mch2g0689 | 436 | SUPERFAMILY | CCCH zinc finger | 280 | 304 | IPR036855 | GO:0046872(InterPro) | |
| Mch2g0689 | 436 | Gene3D | - | 45 | 119 | - | - | |
| Mch2g0689 | 436 | Gene3D | - | 273 | 355 | - | - | |
| Mch2g0689 | 436 | Gene3D | - | 120 | 170 | - | - | |
| Mch2g0689 | 436 | SMART | c3hfinal6 | 88 | 115 | IPR000571 | GO:0046872(InterPro) | |
| Mch2g0689 | 436 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872(InterPro) | |
| Mch2g0689 | 436 | SMART | c3hfinal6 | 276 | 303 | IPR000571 | GO:0046872(InterPro) | |
| Mch2g0689 | 436 | SMART | c3hfinal6 | 135 | 160 | IPR000571 | GO:0046872(InterPro) | |
| Mch2g0689 | 436 | SMART | c3hfinal6 | 319 | 346 | IPR000571 | GO:0046872(InterPro) | |
| Mch2g0689 | 436 | MobiDBLite | consensus disorder prediction | 384 | 436 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch2g0689 | Mch-Chr2:4718607 | Mch3g1386 | Mch-Chr3:16387333 | 1.73E-24 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 42899 | PF00642 | zf-CCCH | 1.90E-06 | CL0537 | Mch | TF |
Pathway information