Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0702 ATGGACAGTTCAGAGGTAAGCTCCGGCGCACCGCCGCCATTTTTGACTAAAACATACGAGATGGTGGACGACCCATCGACAAACGCCGTCGTATCGTGGAGTCAAAGCGGTTTCAGCTTCGTGGTTTGGAACCCACCGGAATTCGCCAAAGAATTGCTCCCAATATATTTCAAGCACAACAATTTCTCCAGCTTCGTTCGCCAATTGAACACTTACGGGTTCAGGAAGATCGATCGAGAGCAATGGGAATTCGCAAACGAGGGATTTGTAAGAGGACGAACCCATCTTCTAAGAACCATCCACCGACGGAAACCAATCTACAGCCACAGCCAGAACCAGAGCCATAGCCAGAACCAGGGCCAGAGCCATAGCCAGAGCTCCAATGGATTTCCATTTTCGGAACCAGAGAGGCAGGAGCTGGAGAACAAAATCAAGATCCTGAATCAAGAAAACACCCAACTTCAATCACAGCTGCAGAAGCACGAAAGAGAGAAAGAAGAAATCGAGCGCCAAATTCAGTCGCTCTGTAACCAATTATGGAGAATGGGGAATGAGCAGAAGCAGCTAATTACCATGCTGACGGCTCAATTGCAGAAGCAGCATCCGAGCAAAAAGAGGAGACTGTGGAAACTGAACGACTTATTGCTGGAAGACCCATCGGAGTGGGAGAAAGAGGAGAAGAATGGTTGGAAGAGCGTGATGATTCCGCCATTGGAGCTGATGGGGAAGCTTGAATCGTCGTTGGGGTTGTGCGAGGAGTTGCTGTGCAGCGTGGCGAAGGTGGTCGGAGAAGAATCGAAGGTGGTCGGAGAAGTCAAGGTTGTGGGGTCGAAGGAGGGGGATGTGAGAAATGGAGCGAATGATGTGTTTTGGGAACAGTTTCTGACGGAGATTCCAGGCTCTTCCAATGCAGGGGAAGTGATCTATTTGAATAGAAGGAATAATGTTGTAAATTAG 957 49.01 MDSSEVSSGAPPPFLTKTYEMVDDPSTNAVVSWSQSGFSFVVWNPPEFAKELLPIYFKHNNFSSFVRQLNTYGFRKIDREQWEFANEGFVRGRTHLLRTIHRRKPIYSHSQNQSHSQNQGQSHSQSSNGFPFSEPERQELENKIKILNQENTQLQSQLQKHEREKEEIERQIQSLCNQLWRMGNEQKQLITMLTAQLQKQHPSKKRRLWKLNDLLLEDPSEWEKEEKNGWKSVMIPPLELMGKLESSLGLCEELLCSVAKVVGEESKVVGEVKVVGSKEGDVRNGANDVFWEQFLTEIPGSSNAGEVIYLNRRNNVVN 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4797523 4798957 - MC02g0596 Mch2g0702 681624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0702 318 Gene3D - 7 104 IPR036388 -
Mch2g0702 318 MobiDBLite consensus disorder prediction 108 133 - -
Mch2g0702 318 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0702 318 SUPERFAMILY Winged helix DNA-binding domain 10 103 IPR036390 -
Mch2g0702 318 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 304 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Mch2g0702 318 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0702 318 MobiDBLite consensus disorder prediction 108 135 - -
Mch2g0702 318 SMART hsfneu3 10 103 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0702 318 Coils Coil 137 185 - -
Mch2g0702 318 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0702 318 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0702 318 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0702 318 FunFam Heat shock transcription factor 1 7 104 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0702 K09419 - - csv:101209621 384.415
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0702 Mch-Chr2:4797523 Mch3g1053 Mch-Chr3:14116413 6.39E-53 dispersed
Mch1g1963 Mch-Chr1:19342758 Mch2g0702 Mch-Chr2:4797523 9.13E-51 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g0901 . 42 271 HSF AT4G17750 52.6 2.2e-59 226.9
Mch8g0564 . 44 244 HSF AT4G17750 54.6 4.2e-58 222.6
Mch9g1357 . 15 215 HSF AT4G17750 55.7 9.7e-55 211.5
Mch5g0557 . 24 252 HSF AT4G17750 50.2 4.5e-52 202.6
Mch3g1053 . 14 186 HSF AT4G17750 52.2 3.8e-43 172.9
Mch2g0702 . 7 109 HSF AT4G17750 67.0 5.2e-40 162.5
Mch8g0678 . 16 129 HSF AT4G17750 64.9 1.7e-38 157.5
Mch11g0300 . 67 165 HSF AT4G17750 69.7 2.8e-38 156.8
Mch6g2698 . 20 115 HSF AT4G17750 69.8 2.0e-36 150.6
Mch10g1679 . 18 513 HSF AT5G16820 50.3 1.2e-102 370.5
Mch9g0901 . 43 254 HSF AT5G16820 58.3 8.8e-61 231.5
Mch8g0564 . 45 243 HSF AT5G16820 51.7 2.7e-54 209.9
Mch5g0557 . 39 243 HSF AT5G16820 50.5 1.0e-48 191.4
Mch1g1963 . 9 139 HSF AT5G16820 60.7 1.5e-39 161.0
Mch2g0702 . 12 111 HSF AT5G16820 74.0 1.0e-37 154.8
Mch10g1679 . 13 510 HSF AT1G32330 53.5 2.9e-120 429.1
Mch9g0901 . 18 246 HSF AT1G32330 52.5 1.0e-61 234.6
Mch8g0564 . 33 225 HSF AT1G32330 53.7 6.1e-54 208.8
Mch5g0557 . 25 234 HSF AT1G32330 55.7 8.9e-53 204.9
Mch2g0702 . 6 111 HSF AT1G32330 67.9 1.3e-40 164.5
Mch1g1963 . 7 139 HSF AT1G32330 58.3 1.7e-40 164.1
Mch8g0678 . 22 122 HSF AT1G32330 71.3 9.5e-39 158.3
Mch11g0300 . 69 164 HSF AT1G32330 71.9 1.4e-37 154.5
Mch9g0901 . 43 249 HSF AT3G02990 57.1 5.6e-60 228.8
Mch8g0564 . 45 244 HSF AT3G02990 52.2 1.4e-55 214.2
Mch1g1963 . 9 138 HSF AT3G02990 57.3 2.1e-38 157.1
Mch2g0702 . 3 105 HSF AT3G02990 68.9 7.8e-38 155.2
Mch9g0901 . 15 245 HSF AT2G26150 55.6 5.3e-68 255.0
Mch5g0557 . 16 238 HSF AT2G26150 61.5 1.5e-62 236.9
Mch10g1679 . 8 243 HSF AT2G26150 56.1 2.8e-61 232.6
Mch3g1053 . 14 158 HSF AT2G26150 55.5 5.0e-42 168.7
Mch1g1963 . 12 139 HSF AT2G26150 61.7 2.1e-40 163.3
Mch5g0557 . 39 173 HSF AT4G18880 52.2 8.7e-38 154.8
Mch5g0218 . 125 576 HSF AT4G13980 52.1 1.3e-112 403.7
Mch8g0564 . 33 236 HSF AT5G43840 50.5 7.3e-47 184.5
Mch5g0557 . 27 174 HSF AT5G43840 58.8 4.0e-45 178.7
Mch9g0901 . 24 360 HSF AT3G22830 51.9 2.0e-90 329.7
Mch8g0564 . 33 242 HSF AT3G22830 55.9 7.2e-64 241.5
Mch10g1679 . 31 242 HSF AT3G22830 59.0 3.9e-62 235.7
Mch9g0901 . 31 246 HSF AT3G51910 61.8 3.0e-66 248.8
Mch8g0564 . 33 249 HSF AT3G51910 51.6 4.1e-55 211.8
Mch9g0901 . 27 235 HSF AT3G63350 57.9 4.2e-63 238.4
Mch8g0564 . 33 232 HSF AT3G63350 53.0 4.9e-51 198.4
Mch9g0901 . 44 232 HSF AT1G67970 51.8 6.9e-45 178.3
Mch1g1212 . 2 300 HSF AT4G36990 54.3 9.2e-74 273.9
Mch6g2698 . 16 336 HSF AT4G11660 52.1 3.0e-80 295.8
Mch11g0300 . 63 166 HSF AT4G11660 74.0 6.9e-45 178.3
Mch8g0678 . 18 124 HSF AT4G11660 69.2 2.2e-43 173.3
Mch1g1212 . 2 107 HSF AT4G11660 70.8 2.5e-42 169.9
Mch6g1258 . 10 107 HSF AT4G11660 68.4 1.8e-37 153.7
Mch10g1679 . 33 126 HSF AT4G11660 69.1 1.6e-36 150.6
Mch1g0401 . 31 216 HSF AT2G41690 56.6 1.3e-47 186.8
Mch11g0300 . 48 398 HSF AT1G46264 52.2 1.2e-88 323.6
Mch8g0678 . 21 342 HSF AT1G46264 52.6 5.0e-82 301.6
Mch6g1258 . 5 200 HSF AT1G46264 54.3 1.6e-56 216.9
Mch10g1679 . 33 138 HSF AT1G46264 72.6 9.6e-41 164.5
Mch5g0218 . 124 219 HSF AT1G46264 71.9 6.4e-37 151.8
Mch2g0702 . 11 104 HSF AT1G46264 72.3 8.4e-37 151.4
Mch6g0800 . 7 179 HSF AT3G24520 65.3 3.0e-60 229.2
Mch9g0901 . 42 271 HSF AT4G17750 52.6 2.2e-59 226.9
Mch8g0564 . 44 244 HSF AT4G17750 54.6 4.2e-58 222.6
Mch9g1357 . 15 215 HSF AT4G17750 55.7 9.7e-55 211.5
Mch5g0557 . 24 252 HSF AT4G17750 50.2 4.5e-52 202.6
Mch3g1053 . 14 186 HSF AT4G17750 52.2 3.8e-43 172.9
Mch2g0702 . 7 109 HSF AT4G17750 67.0 5.2e-40 162.5
Mch8g0678 . 16 129 HSF AT4G17750 64.9 1.7e-38 157.5
Mch11g0300 . 67 165 HSF AT4G17750 69.7 2.8e-38 156.8
Mch6g2698 . 20 115 HSF AT4G17750 69.8 2.0e-36 150.6
Mch10g1679 . 18 513 HSF AT5G16820 50.3 1.2e-102 370.5
Mch9g0901 . 43 254 HSF AT5G16820 58.3 8.8e-61 231.5
Mch8g0564 . 45 243 HSF AT5G16820 51.7 2.7e-54 209.9
Mch5g0557 . 39 243 HSF AT5G16820 50.5 1.0e-48 191.4
Mch1g1963 . 9 139 HSF AT5G16820 60.7 1.5e-39 161.0
Mch2g0702 . 12 111 HSF AT5G16820 74.0 1.0e-37 154.8
Mch10g1679 . 13 510 HSF AT1G32330 53.5 2.9e-120 429.1
Mch9g0901 . 18 246 HSF AT1G32330 52.5 1.0e-61 234.6
Mch8g0564 . 33 225 HSF AT1G32330 53.7 6.1e-54 208.8
Mch5g0557 . 25 234 HSF AT1G32330 55.7 8.9e-53 204.9
Mch2g0702 . 6 111 HSF AT1G32330 67.9 1.3e-40 164.5
Mch1g1963 . 7 139 HSF AT1G32330 58.3 1.7e-40 164.1
Mch8g0678 . 22 122 HSF AT1G32330 71.3 9.5e-39 158.3
Mch11g0300 . 69 164 HSF AT1G32330 71.9 1.4e-37 154.5
Mch9g0901 . 43 249 HSF AT3G02990 57.1 5.6e-60 228.8
Mch8g0564 . 45 244 HSF AT3G02990 52.2 1.4e-55 214.2
Mch1g1963 . 9 138 HSF AT3G02990 57.3 2.1e-38 157.1
Mch2g0702 . 3 105 HSF AT3G02990 68.9 7.8e-38 155.2
Mch9g0901 . 15 245 HSF AT2G26150 55.6 5.3e-68 255.0
Mch5g0557 . 16 238 HSF AT2G26150 61.5 1.5e-62 236.9
Mch10g1679 . 8 243 HSF AT2G26150 56.1 2.8e-61 232.6
Mch3g1053 . 14 158 HSF AT2G26150 55.5 5.0e-42 168.7
Mch1g1963 . 12 139 HSF AT2G26150 61.7 2.1e-40 163.3
Mch5g0557 . 39 173 HSF AT4G18880 52.2 8.7e-38 154.8
Mch5g0218 . 125 576 HSF AT4G13980 52.1 1.3e-112 403.7
Mch8g0564 . 33 236 HSF AT5G43840 50.5 7.3e-47 184.5
Mch5g0557 . 27 174 HSF AT5G43840 58.8 4.0e-45 178.7
Mch9g0901 . 24 360 HSF AT3G22830 51.9 2.0e-90 329.7
Mch8g0564 . 33 242 HSF AT3G22830 55.9 7.2e-64 241.5
Mch10g1679 . 31 242 HSF AT3G22830 59.0 3.9e-62 235.7
Mch9g0901 . 31 246 HSF AT3G51910 61.8 3.0e-66 248.8
Mch8g0564 . 33 249 HSF AT3G51910 51.6 4.1e-55 211.8
Mch9g0901 . 27 235 HSF AT3G63350 57.9 4.2e-63 238.4
Mch8g0564 . 33 232 HSF AT3G63350 53.0 4.9e-51 198.4
Mch9g0901 . 44 232 HSF AT1G67970 51.8 6.9e-45 178.3
Mch1g1212 . 2 300 HSF AT4G36990 54.3 9.2e-74 273.9
Mch6g2698 . 16 336 HSF AT4G11660 52.1 3.0e-80 295.8
Mch11g0300 . 63 166 HSF AT4G11660 74.0 6.9e-45 178.3
Mch8g0678 . 18 124 HSF AT4G11660 69.2 2.2e-43 173.3
Mch1g1212 . 2 107 HSF AT4G11660 70.8 2.5e-42 169.9
Mch6g1258 . 10 107 HSF AT4G11660 68.4 1.8e-37 153.7
Mch10g1679 . 33 126 HSF AT4G11660 69.1 1.6e-36 150.6
Mch1g0401 . 31 216 HSF AT2G41690 56.6 1.3e-47 186.8
Mch11g0300 . 48 398 HSF AT1G46264 52.2 1.2e-88 323.6
Mch8g0678 . 21 342 HSF AT1G46264 52.6 5.0e-82 301.6
Mch6g1258 . 5 200 HSF AT1G46264 54.3 1.6e-56 216.9
Mch10g1679 . 33 138 HSF AT1G46264 72.6 9.6e-41 164.5
Mch5g0218 . 124 219 HSF AT1G46264 71.9 6.4e-37 151.8
Mch2g0702 . 11 104 HSF AT1G46264 72.3 8.4e-37 151.4
Mch6g0800 . 7 179 HSF AT3G24520 65.3 3.0e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002952 2 3 1 1 0 1 1 1 1 2 1 1 1 3 2 1 1 2 1 1 2 3 2 2 2 2 3 4 3 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42901 PF00447 HSF_DNA-bind 1.40E-31 CL0123 Mch TF