Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0713 ATGGGAAGAGGTAAGATTGAGATTAAGAGAATTGAAAACACTACAAATCGGCAAGTGACTTTCTGTAAGAGACGAAATGGGTTGCTTAAGAAAGCTTATGAATTGTCTGTTTTGTGCGACGCGGAAGTTGCCCTCATCGTCTTCTCCACTCGCGGTCGTCTCTACGAATATGCCAATAATAGTGTGAGAGGAACGATCGAAAGGTACAAGAAAGCATTTGCTGACTCTTCCAATTCCGGATTATCAGTTGAAGAAGCTAATGTACAGTTTTACCAGCAAGAGGCGTCGAAGCTGAAGAGACAGATACGGGAAATTCAGAATTCAAACAGGCATATTGTTGGAGAAGCACTGAGCTCATTGTCGTTGAAGGACCTCAAAAGTCTGGAGGGCAGATTGGAGAGAGGCATCACCAAAGTTAGGGCCAAGAAGAACGAAACCCTTTGTGCCGAGATGGAGTTCATGCAGAAGAGAGAAATGGAGCTTCAGAATCACAACAATTATCTGCGAGCTCAGATTGGCGAACACGAGAGAATACGGCAGCAGCAGATGCAATACGAGTCGGCGGCGACGCAATACGATGAGAATGAGAATAGAGGTTATGGGGCGGCGGCGGCGGTGGCGGCGGCTGCGGTGGGGCTTATGGATTCCGATAACAACCATTACGGCCACGCCCAAGACCACCTCACCGCTCTACAGCTCGTGTAG 705 48.09 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKAFADSSNSGLSVEEANVQFYQQEASKLKRQIREIQNSNRHIVGEALSSLSLKDLKSLEGRLERGITKVRAKKNETLCAEMEFMQKREMELQNHNNYLRAQIGEHERIRQQQMQYESAATQYDENENRGYGAAAAVAAAAVGLMDSDNNHYGHAQDHLTALQLV 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4873489 4879032 + MC02g0607 Mch2g0713 681635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0713 234 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch2g0713 234 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch2g0713 234 Coils Coil 81 108 - -
Mch2g0713 234 Coils Coil 178 198 - -
Mch2g0713 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch2g0713 234 Gene3D - 14 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch2g0713 234 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Mch2g0713 234 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch2g0713 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch2g0713 234 FunFam agamous-like MADS-box protein AGL11 13 97 - -
Mch2g0713 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 190 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch2g0713 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch2g0713 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch2g0713 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch2g0713 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch2g0713 234 Pfam K-box region 85 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1925 Mch-Chr11:19087940 Mch2g0713 Mch-Chr2:4873489 1.08E-36 dispersed
Mch2g0713 Mch-Chr2:4873489 Mch3g1043 Mch-Chr3:14054124 1.37E-83 dispersed
Mch1g1976 Mch-Chr1:19399983 Mch2g0713 Mch-Chr2:4873489 1.31E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42902 PF01486 K-box 1.90E-25 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0713 K09264 - csv:101217987 362.073