Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0722 ATGTCAAAGGAAGATGAGAAAAAGAAGGATCCTTATTATTATGATCACCACTTTGATCCTCCTTATGGTGCTGATTTTGATCCCTCCTCTGTTGTTGGTTTCTCTGATTTCTTACATGACTACAACTTCAACTTCTTCTCCGCCGCACTCGACATGTCGTGCTCGTCGTCCGAAGTTATTTCTCCGGTCGATGACGCTTCGAAGAAGTCTTCCGGGGTAGGAGCTGAGTGGGCGGTGACCGGTGAGCACCCATCGTCGTCGTGTTCGTCCGATGATCGGGTGGCGGCTGGGGGTGCTGGTGGTGGTGATTCTGCCAAGAGTGGAGATCAGGTGGTGACGAAAGAGTTTGAAGATAAAGATGGAGAAAAGTGTAAGAAGAAAGTGGAAGGAGGAAAAAAGAAGGAGAAAGGGGAGAAGGGGCCACGGGTTGCGTTCTTGACCAAGACTGAAATAGATAACCTTGAAGATGGATACCGATGGAGAAAATATGGTCAGAAAGCTGTCAAAAACAGCCCTTTTCCAAGGAGTTACTACAAATGCACAACTCAAAACTGCAATGTCAAGAAAAGAGTTGAGAGATCATCCCAAGATCCATCTTTTGTAGTAACAACGTACGAAGGGAAACACAACCACTATTGTCCCGTGACACTTCGAGGCAATGTCGCTGGAATGTCGTTGCCGTTGTCGTCTGCTTCACCGCCGTGGCCTCCGGCCAACTTCTTCTCCGGCGATCCTTATAAAGGAGTTGTTGATGATCACCAAGATTATTCTCAGGTTATTCCTGATCATTATGGGTTGTTGCAAGATTTGATTCCATCCTCGTTCAATCGAAAGCAAGAGCCTTGA 846 46.81 MSKEDEKKKDPYYYDHHFDPPYGADFDPSSVVGFSDFLHDYNFNFFSAALDMSCSSSEVISPVDDASKKSSGVGAEWAVTGEHPSSSCSSDDRVAAGGAGGGDSAKSGDQVVTKEFEDKDGEKCKKKVEGGKKKEKGEKGPRVAFLTKTEIDNLEDGYRWRKYGQKAVKNSPFPRSYYKCTTQNCNVKKRVERSSQDPSFVVTTYEGKHNHYCPVTLRGNVAGMSLPLSSASPPWPPANFFSGDPYKGVVDDHQDYSQVIPDHYGLLQDLIPSSFNRKQEP 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4928813 4930767 + MC02g0615 Mch2g0722 681644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0722 281 Gene3D WRKY domain 141 207 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0722 281 ProSiteProfiles WRKY domain profile. 149 214 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0722 281 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 106 220 IPR044810 GO:0003700(InterPro)
Mch2g0722 281 FunFam WRKY transcription factor 57 140 214 - -
Mch2g0722 281 Pfam WRKY DNA -binding domain 155 211 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0722 281 SUPERFAMILY WRKY DNA-binding domain 147 214 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0722 281 SMART WRKY_cls 154 213 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0722 281 MobiDBLite consensus disorder prediction 61 116 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0722 Mch-Chr2:4928813 Mch7g1247 Mch-Chr7:15992564 2.18E-39 dispersed
Mch1g1126 Mch-Chr1:13832448 Mch2g0722 Mch-Chr2:4928813 1.80E-31 transposed
Mch2g1474 Mch-Chr2:11062735 Mch2g0722 Mch-Chr2:4928813 4.70E-30 transposed
Mch1g1999 Mch-Chr1:19577315 Mch2g0722 Mch-Chr2:4928813 6.33E-44 wgd
Mch2g0722 Mch-Chr2:4928813 Mch4g0053 Mch-Chr4:387618 8.19E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42903 PF03106 WRKY 5.80E-26 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0722 - - - 0.0