Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0724 ATGGCAGCTTCATCAATGGCTCTATCTTCCCCTTCTCTGGCGGGCCAAGCCGTCAAATTGGCCCCCTCCGCCTCCGACCTCCTCGGCGACGGACGTGTCACCATGAGGAAAACTGCGGGCCGGCCCAAGCCCGTCTCATCCGGAAGCCCATGGTACGGCCCAGACCGCGTCAAGTACTTGGGCCCCTTCTCCGGCGAGCCCCCCTCCTACCTCACCGGCGAGTTCCCCGGCGACTACGGCTGGGACACCGCCGGCCTCTCCGCCGACCCGGAGACCTTCGCCAAGAACCGCGAGCTCGAGGTGATCCACTCGAGATGGGCCATGCTTGGGGCCTTGGGCTGCGTCTTCCCGGAGCTCCTCTCCCGCAACGGCGTGAAGTTCGGCGAGGCCGTGTGGTTCAAGGCTGGCTCACAGATCTTCAGCGAAGGTGGGCTCGACTATTTGGGGAACCCGAGCCTGATCCATGCCCAGAGCATTTTGGCGATTTGGGCCTCTCAAGTTGTGTTAATGGGCGCAGTAGAGGGCTACAGAATCGCCGGTGGGCCTCTCGGTGAGGTCACCGACCCAATCTATCCAGGTGGAAGCTTCGACCCATTGGGCCTTGCCGATGACCCAGAAGCTTTTGCAGAGTTGAAGGTGAAGGAGCTTAAGAATGGGAGATTGGCCATGTTTTCGATGTTTGGATTCTTCGTACAGGCCATTGTCACCGGAAAGGGGCCTTTGGAAAACTTGGCCGACCATTTGGCTGATCCTGTTAACAACAATGCTTGGGCCTATGCCACTAACTTTGTGCCGGGAAAGTGA 804 59.7 MAASSMALSSPSLAGQAVKLAPSASDLLGDGRVTMRKTAGRPKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4940071 4941575 - MC02g_new0108 Mch2g0724 681646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0724 267 Gene3D Chlorophyll a/b binding protein domain 58 260 - -
Mch2g0724 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 267 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Mch2g0724 267 SUPERFAMILY Chlorophyll a-b binding protein 50 264 - -
Mch2g0724 267 Pfam Chlorophyll A-B binding protein 67 234 IPR022796 -
Mch2g0724 267 FunFam Chlorophyll a-b binding protein, chloroplastic 58 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0724 Mch-Chr2:4940071 Mch3g1003 Mch-Chr3:13775686 3.54E-184 dispersed
Mch10g1131 Mch-Chr10:8486767 Mch2g0724 Mch-Chr2:4940071 3.22E-121 transposed
Mch11g1702 Mch-Chr11:15941280 Mch2g0724 Mch-Chr2:4940071 6.11E-71 transposed
Mch1g0627 Mch-Chr1:10424657 Mch2g0724 Mch-Chr2:4940071 6.74E-31 transposed
Mch8g2102 Mch-Chr8:24052749 Mch2g0724 Mch-Chr2:4940071 6.66E-153 transposed
Mch1g2002 Mch-Chr1:19602157 Mch2g0724 Mch-Chr2:4940071 1.99E-184 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0724 K08912 - csv:101213845 533.872