Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0789 ATGCAAGATCCAGCTTCTTCAAACCCTATCCACACTCCCAATTCCAATCCGATTCCTCCGCTCAATGTTGCATTGTCGCCGGCAGTAGCTCCTCCGCCGCCGAAGACTCATAAACCCCCGCCGGTGGCGAATGCGACCGCTTCCTCCTCAATGTTCGGGAATTCGAATTCCCCCAACGGCTCATTCGTGCTGAGAGCCGGTTCTCATCATCGGCGGGCTCATTCGGAAGTCAGCTTCCGCTTACCGGAGGATATGATGGATCTCTCCGGCTCCGATCCGTTCAATGGCGGTTCGTCCACCGCAAGTCTGGAGGAGATCGGATCGGAGGATGATCTGTTTTCTACCTACATTGATGTGAAGAAGCTTGGGGGTAATGGAGGGGGGAATTACGCGGATCATAATGCCAATGGCGGAAGTGAAGGCGCCGGCGGTAGTGAGGGAGAGAAGACTTCAAAGCCAAGGCATCGCCATAGCGTCTCCGTGGACGGAACGACGTCGTCGTCCAGCATGTTTGGGGAGATAATGGAAGCCAAGAAAGCCATGCCTCCGGATAAGTTGGCTGAGCTCTGGACCAGTGACCCCAAGCGCGCCAAAAGGATATTGGCAAATCGACAGTCTGCAGCTCGCTCAAAAGAGAGGAAAGCGCGATATATACAAGAGCTCGAGCGCAAAGTGCAGACCCTTCAAACAGAAGCAACTACTCTATCAGCCCAATTGACTTTGTTCCAGCGAGACACAACGGGTCTCAGTACCGAGAATACAGAGCTTAAACTGCGGCTGCAGGCTATGGAGCAACAGGCTCAATTGCGTGATGCTCTGAATGAAGCACTAAAGAAGGAAGTCGAGAGGCTTCGAATCGCTACCGGGGAAATAATGAGCCCTTCTGAGTCGTTTAACTTGGGAATGCATCACATGGCATACGCCCCATCGTCTTTCATTCAACTTCCACCGCAACCGGGATCTGCAGGCCCTCAGAACATGCAAATGCCACCATATAGCCATTCACTATCTAATATGTCTAGCCACCCTCTGCATCAATCAGATTCTCATTCTCTCTCAGAAGTTCTGCAGAGCGACCCCATAGGCCGATTGCAGGGTCTCGACATCAGTAGTAAAGGACCATCACTCGTGAAATCCGAGGGCCCCTCACTTTCTGCTAGTGAGAGCAGTACAACCTTTTGA 1182 52.37 MQDPASSNPIHTPNSNPIPPLNVALSPAVAPPPPKTHKPPPVANATASSSMFGNSNSPNGSFVLRAGSHHRRAHSEVSFRLPEDMMDLSGSDPFNGGSSTASLEEIGSEDDLFSTYIDVKKLGGNGGGNYADHNANGGSEGAGGSEGEKTSKPRHRHSVSVDGTTSSSSMFGEIMEAKKAMPPDKLAELWTSDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLRIATGEIMSPSESFNLGMHHMAYAPSSFIQLPPQPGSAGPQNMQMPPYSHSLSNMSSHPLHQSDSHSLSEVLQSDPIGRLQGLDISSKGPSLVKSEGPSLSASESSTTF 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5435670 5438726 + MC02g0674 Mch2g0789 681711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0789 393 SMART brlzneu 191 255 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0789 393 MobiDBLite consensus disorder prediction 1 21 - -
Mch2g0789 393 MobiDBLite consensus disorder prediction 314 358 - -
Mch2g0789 393 Pfam bZIP transcription factor 195 243 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0789 393 SUPERFAMILY Leucine zipper domain 195 246 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0789 393 FunFam probable transcription factor PosF21 194 247 - -
Mch2g0789 393 MobiDBLite consensus disorder prediction 42 63 - -
Mch2g0789 393 MobiDBLite consensus disorder prediction 1 106 - -
Mch2g0789 393 MobiDBLite consensus disorder prediction 376 393 - -
Mch2g0789 393 MobiDBLite consensus disorder prediction 312 393 - -
Mch2g0789 393 Coils Coil 259 283 - -
Mch2g0789 393 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 193 256 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0789 393 CDD bZIP_plant_RF2 196 245 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0789 393 MobiDBLite consensus disorder prediction 123 169 - -
Mch2g0789 393 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 42 346 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch2g0789 393 Gene3D - 194 247 - -
Mch2g0789 393 MobiDBLite consensus disorder prediction 24 40 - -
Mch2g0789 393 Coils Coil 211 238 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0789 Mch-Chr2:5435670 Mch9g1386 Mch-Chr9:16236536 9.86E-86 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42913 PF00170 bZIP_1 1.40E-08 CL0018 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0789 - - - 0.0