Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch2g0797 | ATGGAAAATAAATCGAGTGTGATGATACAAAGGTATGAATTAGGGAGATTACTCGGCCAAGGAACCTTTGCAAAGGTATATTATGCGAGGAATACAAGGAGTAATCAAAGTGTGGCAATTAAGGTGATTGATAAAGAAAAGATTACAAAGGCTTCACTAATCGATCAGATTAAGCGTGAAATTTCGATTATGAGACTTGTTAGACATCCTAATATTGTACATCTTTACGAGGTTATGGCCACAAAGACTAAGATCTACTTTGTCTTGGAGTATGCTAAAGGCGGTGAGCTCTTTGACAAGGTTGCTAAAGGGAGGCTGAAGGAGGATGTTGCTTGGAAATATTTTTACCAGTTAATCAATGCTGTTGATTTCTGTCACAGTAGGGGAGTATATCACCGTGATATAAAGCCGGAGAACCTACTCCTTGATGAAAATGAGAATCTTAAGGTGTCTGATTTTGGTTTAAGCGCGCTAGCCGAGTCCAGGCGTCAAGATGGGTTGCTCCACACTACTTGTGGTACTCCAGCTTATGTTGCCCCTGAAGTCATCAGTAGGAAGGGCTATGATGGTGCAAAATCTGATATCTGGTCTTGTGGAGTAGTTTTGTTTGTCTTGTTGGCAGGTTATCTCCCATTCCACGATTCAAATTTGATGGAAATGTATCGGAAGATTGGAAGAGCAGAATATAAATGCCCGAGTTGGTTCCCTCGTGAAGTGCGGAGGCTGCTAAGTCGGATGCTCGATCCAAACCCCAATACGAGGACGCCCATAGCAATGATTAGACAAAGTTCTTGGTTCAAAAAAGGATTGAGGTTAAAGAATGTTGGAAGTGGAACAGAAAGCGATGCTGTAACTACAGAAGATGAAGCTACTTCTGGACCATCTGAGAGTAGTGTCCCTGACCCTGCAGATGGAAAGCAAGAGCCAGATAGACCCCCGAGTTTGAATGCTTTCGATATCATCTCCCTTTCTGCAGGATTCGATCTATCCAGTTTATTTGAAGACAACTCAAAGAAGAAAGAAACGTTGTTTACTTGTAGAAAACATGCCTCTGTCATTCTCTCAAAGCTGGAAGAAGTTGCCAAACTTCTAAGGTTCCGTGTGCAGAAGAAGGAAGCTGGCCTACTGAAGTTTGAGGCACTAACAGAGGGTAAAAAGGGGGCATTGTCCATTGATACAGAGATCTTTGAGGTTACTCCATCGTTTTATTTGGTGGAGATGAAAAAATCTAATGGAGACACATTGGAATATCAGAAGATATTGAAAGAGGATATAAGGCCAGCCCTACAGGATATTGTATGGGTTTGGCGGGAAGATCATGAGCAGCAGCAGCAACAACAACAACAGCCTCAGCTTCTCCAACACCAGGATCCGAATCTGGAACGGGAGCAAGATGGCACATCACAAAGCAGTAGCAGCACGAAGAACAACTCACAAAACCTGGGTTCGGAAGGATCTTAA | 1461 | 42.78 | MENKSSVMIQRYELGRLLGQGTFAKVYYARNTRSNQSVAIKVIDKEKITKASLIDQIKREISIMRLVRHPNIVHLYEVMATKTKIYFVLEYAKGGELFDKVAKGRLKEDVAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESRRQDGLLHTTCGTPAYVAPEVISRKGYDGAKSDIWSCGVVLFVLLAGYLPFHDSNLMEMYRKIGRAEYKCPSWFPREVRRLLSRMLDPNPNTRTPIAMIRQSSWFKKGLRLKNVGSGTESDAVTTEDEATSGPSESSVPDPADGKQEPDRPPSLNAFDIISLSAGFDLSSLFEDNSKKKETLFTCRKHASVILSKLEEVAKLLRFRVQKKEAGLLKFEALTEGKKGALSIDTEIFEVTPSFYLVEMKKSNGDTLEYQKILKEDIRPALQDIVWVWREDHEQQQQQQQQPQLLQHQDPNLEREQDGTSQSSSSTKNNSQNLGSEGS | 486 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 5493232 | 5496796 | - | MC02g0680 | Mch2g0797 | 681719 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch2g0797 | 486 | FunFam | Non-specific serine/threonine protein kinase | 3 | 91 | - | - | |
Mch2g0797 | 486 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 130 | 142 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch2g0797 | 486 | MobiDBLite | consensus disorder prediction | 275 | 312 | - | - | |
Mch2g0797 | 486 | SMART | serkin_6 | 12 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch2g0797 | 486 | MobiDBLite | consensus disorder prediction | 278 | 298 | - | - | |
Mch2g0797 | 486 | SUPERFAMILY | Protein kinase-like (PK-like) | 8 | 267 | IPR011009 | - | |
Mch2g0797 | 486 | ProSitePatterns | Protein kinases ATP-binding region signature. | 18 | 41 | IPR017441 | GO:0005524(InterPro) | |
Mch2g0797 | 486 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 301 | - | - | |
Mch2g0797 | 486 | Gene3D | Kinase associated domain 1, KA1 | 310 | 435 | - | - | |
Mch2g0797 | 486 | ProSiteProfiles | Protein kinase domain profile. | 12 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch2g0797 | 486 | Pfam | NAF domain | 312 | 370 | IPR004041 | GO:0007165(InterPro) | |
Mch2g0797 | 486 | ProSiteProfiles | NAF domain profile. | 310 | 334 | IPR018451 | GO:0007165(InterPro) | |
Mch2g0797 | 486 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 4 | 423 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Mch2g0797 | 486 | FunFam | Non-specific serine/threonine protein kinase | 310 | 434 | - | - | |
Mch2g0797 | 486 | Pfam | Protein kinase domain | 12 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch2g0797 | 486 | FunFam | Non-specific serine/threonine protein kinase | 2 | 292 | - | - | |
Mch2g0797 | 486 | CDD | STKc_SnRK3 | 11 | 265 | - | - | |
Mch2g0797 | 486 | CDD | CIPK_C | 316 | 430 | - | - | |
Mch2g0797 | 486 | MobiDBLite | consensus disorder prediction | 444 | 486 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0507 | Mch-Chr11:3220558 | Mch2g0797 | Mch-Chr2:5493232 | 8.30E-169 | dispersed | |
Mch2g0797 | Mch-Chr2:5493232 | Mch3g1072 | Mch-Chr3:14233192 | 2.15E-204 | dispersed | |
Mch2g0796 | Mch-Chr2:5490155 | Mch2g0797 | Mch-Chr2:5493232 | 1.53E-135 | tandem | |
Mch1g1268 | Mch-Chr1:14891070 | Mch2g0797 | Mch-Chr2:5493232 | 9.05E-17 | wgd | |
Mch2g0797 | Mch-Chr2:5493232 | Mch4g2347 | Mch-Chr4:24752181 | 1.64E-22 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77208 | PF00069 | Pkinase | 1.30E-74 | CL0016 | Mch | PK |
Pathway information
