Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0805 TCCGCCATGTCTAAACCCAATTCATCTTCAAATCCGCCATTGTTGTCTCCTCCTCCTTCTTCTTCCTTCTTCACCATCCCTCCTGGCCTCAGCCCCTCCCAATTCCTCCACTCCCCTCTCCTCCTCAACTCTTCTCATATTCCGCCGTCGCCGACAACCGGAGCGTTTTCCGCCGGGGCTTCGACCGGAAACAGAGACAACTCCGGCCAACACCAAGAGAACAACATCAAAGAAGAACACACACACATACACAACAACAAATTGCCCGAATTCTCAACGAAAGTTACAAAAACAACACTCAAACAAAACCCATTAATTGAATTTAAATTCCTTGGCGAATGGCGTGTGATTTTATTTTCTGAAAATCAGAGAAACAGAGCATCTGAGGACGGGTTTAATTGGAGAAAATACGGCCAAAAAGTGGTGAAAGGAAGTGAAAATCCGCGAAGTTATTACAAGTGTACGCACCAGAATTGCCCTGCGAGGAAACAGGTTGAGAAATGTTTGAATGGCCGAATTACAGAGATTGTTTATAAGAGCAAACACAACCATCCAAAAACAGAGTTCCCGACAAGATCCTCAGCCCAGAATTCTTCAGTTGCAAGTATTGGACACGATGATGAGTTTGAATTTGATGCCACAACATGGTTTGTTTTCCAAAACCCCCCTTTAGGATTATGGCTATTTACTTCATTATCTTCGCCAAACGAAATTCAAATTTTAAGGAAAAGTGAGAGTGAAAAAGAAATATTACGTGGAGGAGGAAGCAGAGCGGTGAGAGATCAGAGGGTTGTGGTTCAAACAATCAGTAACATCGACAAATTAGACGATGGATATTGGTGGAGAAAATATGGACAGAAAATCGTCAAGGGAAATCCAAATGCAAGGAGCTACTACAAGTGCACGTACGGAGGATGTGGAGTGAGGAAGCATATAGAGAGAGCGTCCCACGATTTAAGGGCAGTCATCACCACCTACGAAGGGAAGCACAACCACCATATTCCGGCACCCCGCGGCGGCGACGGCGACACTGCGGCGGCGACGGCCATGATTTCTCATTCCGAGATCTCCGGTGGATATGGATTCTCGGAGCCATTTTCCGGTCGTTACTCCTAG 1116 45.88 SAMSKPNSSSNPPLLSPPPSSSFFTIPPGLSPSQFLHSPLLLNSSHIPPSPTTGAFSAGASTGNRDNSGQHQENNIKEEHTHIHNNKLPEFSTKVTKTTLKQNPLIEFKFLGEWRVILFSENQRNRASEDGFNWRKYGQKVVKGSENPRSYYKCTHQNCPARKQVEKCLNGRITEIVYKSKHNHPKTEFPTRSSAQNSSVASIGHDDEFEFDATTWFVFQNPPLGLWLFTSLSSPNEIQILRKSESEKEILRGGGSRAVRDQRVVVQTISNIDKLDDGYWWRKYGQKIVKGNPNARSYYKCTYGGCGVRKHIERASHDLRAVITTYEGKHNHHIPAPRGGDGDTAAATAMISHSEISGGYGFSEPFSGRYS 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5538629 5541167 - MC02g0687 Mch2g0805 681727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0805 371 Pfam WRKY DNA -binding domain 276 333 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0805 371 Pfam WRKY DNA -binding domain 129 185 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0805 371 MobiDBLite consensus disorder prediction 42 70 - -
Mch2g0805 371 SUPERFAMILY WRKY DNA-binding domain 267 335 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0805 371 FunFam WRKY transcription factor 261 336 - -
Mch2g0805 371 ProSiteProfiles WRKY domain profile. 270 335 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0805 371 Gene3D WRKY domain 114 187 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0805 371 Gene3D WRKY domain 260 336 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0805 371 SMART WRKY_cls 128 186 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0805 371 SMART WRKY_cls 275 334 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0805 371 SUPERFAMILY WRKY DNA-binding domain 126 186 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0805 371 ProSiteProfiles WRKY domain profile. 129 187 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g0805 371 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 71 169 IPR044810 GO:0003700(InterPro)
Mch2g0805 371 FunFam WRKY transcription factor 119 188 - -
Mch2g0805 371 MobiDBLite consensus disorder prediction 1 23 - -
Mch2g0805 371 MobiDBLite consensus disorder prediction 42 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0805 Mch-Chr2:5538629 Mch3g0043 Mch-Chr3:448332 3.10E-75 dispersed
Mch2g0805 Mch-Chr2:5538629 Mch4g2348 Mch-Chr4:24759190 9.64E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42914 PF03106 WRKY 5.70E-22 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0805 K13424 - csv:101205221 315.079