Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0815 GGTGTTTCGCCATGCGCGTCGTGTAAATTGCTGCGGCGGCGGTGCGGCAAGGACTGCGTATTCGCGCCTTATTTTCCGGCCGACGACCCCCACAAATTCGCCATTCTTCATAAGATCTTCGGCGCCAGCAATGTCAGCAAAATGTTGCAGAAGCTTCTAGAAGATCAAAGAGCAGATGCAGTGAGTAGTTTGGTATACGAAGCGAGTGTGAGAATGCGAGACCCAGTATACGGATGCGCCGGGGCAGTCTCTCATCTCCAAAATGCAGTGTCCCGACTGGAAATGCAGCTAGCCACGGCGCGGGCAGAGCTATTGAACTTTCAGATGCAGCAACAGCAGACTCCGACGAGCAGCCAAGTAGTGCAGCAAGAAGTTTATCATAAGCTTATTTCTTTCTCAAATGAAGATTGTTGTTCTTCTATCAATATTTTCGAGCAAGTGGAAGATTACAACTCCTTGTGGAGT 465 49.46 GVSPCASCKLLRRRCGKDCVFAPYFPADDPHKFAILHKIFGASNVSKMLQKLLEDQRADAVSSLVYEASVRMRDPVYGCAGAVSHLQNAVSRLEMQLATARAELLNFQMQQQQTPTSSQVVQQEVYHKLISFSNEDCCSSINIFEQVEDYNSLWS 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5603779 5604966 + MC02g0695 Mch2g0815 681737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0815 155 ProSiteProfiles LOB domain profile. 3 104 IPR004883 -
Mch2g0815 155 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 122 - -
Mch2g0815 155 Coils Coil 83 110 - -
Mch2g0815 155 Pfam Lateral organ boundaries (LOB) domain 4 101 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0815 Mch-Chr2:5603779 Mch4g0045 Mch-Chr4:317030 4.11E-50 dispersed
Mch1g2070 Mch-Chr1:20064477 Mch2g0815 Mch-Chr2:5603779 2.13E-34 transposed
Mch2g0815 Mch-Chr2:5603779 Mch9g1433 Mch-Chr9:16724604 6.03E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42915 PF03195 LOB 5.50E-39 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0815 - - - 0.0