Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0837 AATTTCTCTCTTTTGCTCGAATTATCAGCTAAAGATGACCTGATTGGATTTAAGAAGGCTGTGGAGGAAGATGGCCATGATATTGATGAATCAAGCTTGTGGTATGGGAGAATTTTTGGTTCAAAGAAGATGGGATATGAAGAAAGGACCCCTCTTATTGTTGCAGCCATGTTTGGGAGCATGAATGTCCTATCTTATATCCTTCGCAGTGGTCGTGTTGATGTTAATCGGGCTTGTGGTTCTGATGGCGCCACGGCACTCCATTGTGCCGTTGCTGGTGGTTCTGCTATCTTAGATCAGGTTGCTAAAGTGTTGCTTGACGCTTCTGCTGACGTGAACGCCGTTGATGCAAATGGTAACCGGCCCGGTGACTTGATTGCTCCTGCTCATACTTTAGCCTTCTATTCAAGAAAAAAGGCACTGCAACAATTGCTAAATGGCGCTGATGAAAGTGAAGAAACTCTTGGTTCATCCAACAAAATATTTTATGAGAGAGGAGTGGAGGAGCCTTGGGAGGTTTCGACTGCTCGGGTTTCAAGAGACGGGACAGAGAAAAAAGAGTATCCAGTTGATCTCTCTCTTCCAGACATCAAGAATGGAATATATAGCACAGATGAGTTTAGAATGTATACTTTTAAGATCAAGCCTTGTACGAGAGCTTACTCCCATGATTGGACAGAGTGTCCATTTGTACACCCGGGGGAAAATGCAAGGAGGCGGGATCCGAGGAAATACCATTACAGCTGCGTGCCGTGTCCCGAATTCAGAAAGGGCACATGTAGGCAGGGGGATGCCTGTGAATATGCTCATGGAATTTTTGAATGTTGGCTCCATCCTGCTCAATATCGTACTCGTCTTTGCAAGGATGAAACTGGATGCACCAGAAAAGTCTGTTTCTTTGCTCACAAACCGGAAGAGCTCCGCCCGCTGTATGCCTCAACCGGTTCTGCTGTAGTGTCTCCGAGATCAATCTGTGGTTCTTCACTAGATATTGCGTCAATCAGCTCACTTACTCTTGGTTCTCCTTCAGCTGTGATACCTCCTTCATCAACCCCACCCATGACTCCTTCTGGAGTTTCTTCTCCGATGGGTGGAACCTTGTGGCAGACTCAATGTAATATCGCACCACCGACCTTGCAGCTTCCAGGTAGCAGGTTGAAGGCTGCTTGGAGCGCGAGAGACATAGATTTAGATGTTGAGTTACTTGGTCTTGAAAATCAGCGCCGTAGACAGCAACAGTTAATGGATGAGCTATCCTGTCTGCCTTCTCCTTCCAGATGGAACAGTGGCTTGTCAACCCCTGCATCTTTTCCATCCCCCAGGAGTAGAAATGGAGAAATGAATGGGCTCGGAGGCGTGAATCCTACTAACCTCGAGGACATTTTCGGGTCTGTAGATCCCGCAACTTTATCCCAATTACAAGGACTTTCACTGGACTCTGTTGCATCTCAGGTACAATCCCCTTCTGGGATTCAGATGCGCCAAAACATGAATCAGTCATTCCTCTCACGATATGCTAACAGCATCGCATCCCCTCCTGCAAGGGCATCTCAGCCTTTTGGTGTCGACATGTCGGTGTCTGCTGCAACAAGTGTTCTGAGTTCCCGGGCTGCTGCTTTCGCCAAGCGGAGCCAGAGCTTTATCGAACGTGGTGCAGTGAATCGTCATTCTGGACTTTCAGTCTCACCCCCAGCTACATCTGCAACTGCTATGCCTTTGAACAACCTCTCTGATTGGGGCTCGCCCGACGGGAAACTAGACTGGGGAATTCATGGGGAAGAACTCCACAAGTTAAGAAAATCCGCATCGATTGGGTTACGAGGCAGTTGCAGCAGTTCTTTAGCAATCACATCTGCAATGCATGCTGCTCCTGCGGAGCCAGACGTGTCGTGGGTTCAGTCCCTGGTGAAGGATGCTCCG 1920 48.12 NFSLLLELSAKDDLIGFKKAVEEDGHDIDESSLWYGRIFGSKKMGYEERTPLIVAAMFGSMNVLSYILRSGRVDVNRACGSDGATALHCAVAGGSAILDQVAKVLLDASADVNAVDANGNRPGDLIAPAHTLAFYSRKKALQQLLNGADESEETLGSSNKIFYERGVEEPWEVSTARVSRDGTEKKEYPVDLSLPDIKNGIYSTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGTCRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPLYASTGSAVVSPRSICGSSLDIASISSLTLGSPSAVIPPSSTPPMTPSGVSSPMGGTLWQTQCNIAPPTLQLPGSRLKAAWSARDIDLDVELLGLENQRRRQQQLMDELSCLPSPSRWNSGLSTPASFPSPRSRNGEMNGLGGVNPTNLEDIFGSVDPATLSQLQGLSLDSVASQVQSPSGIQMRQNMNQSFLSRYANSIASPPARASQPFGVDMSVSAATSVLSSRAAAFAKRSQSFIERGAVNRHSGLSVSPPATSATAMPLNNLSDWGSPDGKLDWGIHGEELHKLRKSASIGLRGSCSSSLAITSAMHAAPAEPDVSWVQSLVKDAP 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5731251 5733170 - MC02g0711 Mch2g0837 681759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0837 640 ProSiteProfiles Ankyrin repeat profile. 82 117 IPR002110 GO:0005515(InterPro)
Mch2g0837 640 Pfam Ankyrin repeats (3 copies) 47 116 IPR002110 GO:0005515(InterPro)
Mch2g0837 640 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 250 271 IPR000571 GO:0046872(InterPro)
Mch2g0837 640 MobiDBLite consensus disorder prediction 429 443 - -
Mch2g0837 640 Gene3D - 247 309 - -
Mch2g0837 640 Gene3D - 4 146 IPR036770 -
Mch2g0837 640 ProSiteProfiles Ankyrin repeat region circular profile. 82 116 - -
Mch2g0837 640 SUPERFAMILY Ankyrin repeat 44 144 IPR036770 -
Mch2g0837 640 MobiDBLite consensus disorder prediction 429 449 - -
Mch2g0837 640 ProSiteProfiles Zinc finger C3H1-type profile. 251 273 IPR000571 GO:0046872(InterPro)
Mch2g0837 640 SMART c3hfinal6 246 272 IPR000571 GO:0046872(InterPro)
Mch2g0837 640 SMART c3hfinal6 281 304 IPR000571 GO:0046872(InterPro)
Mch2g0837 640 SMART ANK_2a 47 77 IPR002110 GO:0005515(InterPro)
Mch2g0837 640 SMART ANK_2a 82 114 IPR002110 GO:0005515(InterPro)
Mch2g0837 640 FunFam Zinc finger CCCH domain-containing protein 66 204 272 - -
Mch2g0837 640 PANTHER UNKEMPT FAMILY MEMBER 44 639 IPR045234 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0837 Mch-Chr2:5731251 Mch5g1393 Mch-Chr5:14948843 3.04E-159 dispersed
Mch2g0837 Mch-Chr2:5731251 Mch9g1463 Mch-Chr9:17005084 1.01E-251 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42917 PF12796 Ank_2 4.30E-07 CL0465 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0837 - - - 0.0