Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0888 ATGGATCCAAACTTCAATGGATTCCCAGATCGTAGAGTTGATTATCAGACCCCTTTAGCCCAATTAAATGATCCTCCCAATTATTTGACTGATGGGTTCAGAGTGAACGATCGGACTTCTTTGCCCACTTCGTATCTGTACCCTGAACTCGAAAAGAGTTTCGAATTCAACGAGCCATCTCTGGATCTTTTTCCCTTTGTGGGGAATTCCCTTTTCCCCTACGAATCGGACCCTAACAATTTTTCATCGGGGTCGAGTGAGAGGCGGGAAGGGGAGTCGTTTTCTCGGTCGGTGAGGTTGAGCTCGGACGGGGGTGGTCCCGGGGTATCTTCAGGCTTCAGCCCTGGTGGTGACTCTTCCTCGGACGAGAGTGACTTTAGGGAAACAGTTCTCAATTACATAAGCCAAATGCTTATGGAGGAGAATTTGGAGGAGAAGCCCTGTATGTTTTATGATCCTCTGGGGCTTAAAGATACTGAGAAATCGTTCTATGATGCTCTTGGTAAGAACTACCCTCCTTCGCCTAACCAACCTCCCCTGGATTGTGAGAGCTCTGAAGATGCTTGTCATGGAAATGACAGTGATCATGCTGGTAGTGTTAGTATTGGCACCAGCAATTCGCCTGACCCGCAATGGGTTGTTGATCCTGGAGAGTATAAGCCCTCTATACTTCCAACGTCTTTTCCTGTCAGCTCCTATCAGTCGAATTTCGAGCTCAGTTCTGGCAGCCAAAACAACCTGACTATTAACAGTCATCAGCTAGTCACTGAATTGTTGGCTCAGAATATCTTTAGTGATAGCACTTCCATCTTGCAATATAAGAAAGGGTTGGAGGAGGCTAGTAAGTTTCTTCCGGGAGTTAGCCAGCTGAATATCGATCTGGGCAGTGGCCTGTTGACAGGAGTAGCTTCTAAGGTCATGGATACAACAGCAACAGTGAAGGATAGAAGGGAGAATTCACCGAATGGATCGAAGGGAAGGAAAAATCATGAACGTGGAGATGTAGACTTGGATTTGCAAGAAGGGAGAAGAAACAAGCAGGCTGCCGTTTATGTGGATGAGGAAGAATTATCTGACATGTTTGATAAGGTATTACTATATGATTGTGGAAATGAAACCTCTGCAAATGGTGGGTGTGAGAAATTGCAGTCTACCGTACAACTTCATGGATCGATTGCTGGGAAAGCTCGGGAAAGGAAACAGGAGAAGAGAAAAGACTCTGTGGATTTGAGAAATCTTCTGATTTTATGCGCACAAGCTGTGTCTACTGATGACCGTCGGATTGCTCACGAACTACTTAGGCAGATTAGGCAGCATTCTACAACGATTGGTGATGGTTCCCAGAGAATGGCTCATTTCTTTGCTAATGCTCTTGAGGCTCGCATGGTTGGCACTGGCACAGGAAGCAAAATGTACTATGAAACACTAGCGCAAAGCAAGATTTCAGCTGCTGATATGTTGAAAGCTTACCAAGTTCACCTTTCATCCTGCCCTTTTAAGAAACTCTCGCTCTTTTTCATGATTAAAATGGTTCTGAAGGTTGCAGAGAAGGCCAAAAGTCTTCATATTATTGATTTTGGTATTTGCTATGGTTTCCTCTGGCCAATGTTAATTCAGTTTCTTTCCCAACTCCCTGATGGTCCACCCAAGCTACGCATTACTGGTATAGATCATCCTCAACCAGGATTTCGTCCAGCAGAAAAAATTGACGAGACAGGTCGACGTTTGGCTAAGTACTGCGAGCGCTTTAAGGTTCCTTTTCAATATCAAGGGATAGCATCACATAACTGGGAAACTATCCGAATTGAGGACTTAAAGCTTAATAGCAGCGATGTCCTTGTTGTGCACAGTTTCTATAGGTTTAAGAACCTACTTGATGAAACTGTTGAAGAAAGTAGTCCAAGGGATGTTGTTCTGCGTTTAATAAGGAAGATGAATCCAAACATCTTCGTCCATTCCGTGGTTAGTGGATCCTACCACGCGCCCTTCTTCATAACGCGGTTTAGGGAGGCCCTCTTCCACTTCTCTGCATTATATGATGCTTTAGATGTTAATTTACCTCGTGAAAGTGAAGAGAGGATGATGATAGAGAGAGAGTTTCTTGGGCGCCAAATTATGAACGTAGTAGCATGTGAGGGTGTTGAGAGGGTCGAAAGGCCTGAGACCTACAAGCAGTGGCATGTCCGGTGTATGAGAGCGGGTTTCAAACAGCTTCCTTTAGACCAGGAGATCATGAACAAGTTCAGGTGCAAGTTAACATGCAATTACCACAAAGATTTTGTACTTGATCAAGACGATGGCTGGATGCTACAGGGATGGAAAGGCCGGATTGTGTATGGTTCTTGTTGTTGGGTGCCAACATAG 2364 44.75 MDPNFNGFPDRRVDYQTPLAQLNDPPNYLTDGFRVNDRTSLPTSYLYPELEKSFEFNEPSLDLFPFVGNSLFPYESDPNNFSSGSSERREGESFSRSVRLSSDGGGPGVSSGFSPGGDSSSDESDFRETVLNYISQMLMEENLEEKPCMFYDPLGLKDTEKSFYDALGKNYPPSPNQPPLDCESSEDACHGNDSDHAGSVSIGTSNSPDPQWVVDPGEYKPSILPTSFPVSSYQSNFELSSGSQNNLTINSHQLVTELLAQNIFSDSTSILQYKKGLEEASKFLPGVSQLNIDLGSGLLTGVASKVMDTTATVKDRRENSPNGSKGRKNHERGDVDLDLQEGRRNKQAAVYVDEEELSDMFDKVLLYDCGNETSANGGCEKLQSTVQLHGSIAGKARERKQEKRKDSVDLRNLLILCAQAVSTDDRRIAHELLRQIRQHSTTIGDGSQRMAHFFANALEARMVGTGTGSKMYYETLAQSKISAADMLKAYQVHLSSCPFKKLSLFFMIKMVLKVAEKAKSLHIIDFGICYGFLWPMLIQFLSQLPDGPPKLRITGIDHPQPGFRPAEKIDETGRRLAKYCERFKVPFQYQGIASHNWETIRIEDLKLNSSDVLVVHSFYRFKNLLDETVEESSPRDVVLRLIRKMNPNIFVHSVVSGSYHAPFFITRFREALFHFSALYDALDVNLPRESEERMMIEREFLGRQIMNVVACEGVERVERPETYKQWHVRCMRAGFKQLPLDQEIMNKFRCKLTCNYHKDFVLDQDDGWMLQGWKGRIVYGSCCWVPT 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6044081 6047468 - MC02g0762 Mch2g0888 681810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0888 787 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 396 784 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Mch2g0888 787 MobiDBLite consensus disorder prediction 167 212 - -
Mch2g0888 787 ProSiteProfiles GRAS family profile. 401 785 IPR005202 -
Mch2g0888 787 MobiDBLite consensus disorder prediction 310 340 - -
Mch2g0888 787 MobiDBLite consensus disorder prediction 1 34 - -
Mch2g0888 787 Pfam GRAS domain family 410 784 IPR005202 -
Mch2g0888 787 MobiDBLite consensus disorder prediction 78 125 - -
Mch2g0888 787 MobiDBLite consensus disorder prediction 197 211 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0888 Mch-Chr2:6044081 Mch4g1417 Mch-Chr4:17650390 4.54E-46 dispersed
Mch2g0888 Mch-Chr2:6044081 Mch3g0228 Mch-Chr3:3043057 6.82E-172 wgd
Mch2g0888 Mch-Chr2:6044081 Mch5g1847 Mch-Chr5:18703155 3.90E-196 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42921 PF03514 GRAS 1.10E-103 CL0063 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0888 K27753 - csv:101203568 1094.34